PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004695.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 210aa    MW: 23568.1 Da    PI: 7.581
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004695.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.81.5e-25147208159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                     +dDg++WrKYGqK + ++++pr+Y+rCt++   gC+++k+v+r +++p+++ +tY g+H ++
  FANhyb_rscf00004695.1.g00001.1 147 VDDGHAWRKYGQKIILNATHPRNYFRCTHKfdqGCKATKHVQRIKDEPQLFRTTYIGNHACT 208
                                     59***************************9999**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-26132208IPR003657WRKY domain
SuperFamilySSF1182901.05E-24140207IPR003657WRKY domain
PROSITE profilePS5081121.987142205IPR003657WRKY domain
SMARTSM007749.1E-37147209IPR003657WRKY domain
PfamPF031062.7E-24148207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEWTWAESVS SNRQRVMEEL VQGREMTNQL RGVLSSDVRS AEGLVTKILG SLTNTLLILS  60
GSQEPKEELI YSQVQANSSN ISAVTASGSA TAGPDSSSWD VVHDDAMKSE DSSEESCRST  120
ETFKDGRGSY KRRKTSHSWT KDTLDLVDDG HAWRKYGQKI ILNATHPRNY FRCTHKFDQG  180
CKATKHVQRI KDEPQLFRTT YIGNHACTGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-23147207868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302592.11e-146PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S5SL991e-124A0A1S5SL99_FRAVE; WRKY transcription factor 41
STRINGXP_004302592.11e-145(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-39WRKY DNA-binding protein 70