PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004702.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 351aa    MW: 39743.5 Da    PI: 8.4715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004702.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.1e-13138947
                                    HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    d+llvd+v+++ g +Wk Ia+ ++ gR++ qc++rwqk+
  FANhyb_rscf00004702.1.g00001.1  1 DKLLVDLVRKFNGSNWKQIAAGIP-GRSDVQCQHRWQKV 38
                                    79**********************.************96 PP
2Myb_DNA-binding56.85.1e-184590148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g WT eEd+ ++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
  FANhyb_rscf00004702.1.g00001.1 45 KGYWTVEEDDCIIKLVEKYGAR-WSFIAKFLP-GRIGKQCRERWYNHL 90
                                    689*******************.*********.*************97 PP
3Myb_DNA-binding52.21.4e-1696138145
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                     +++WT++E+  lv +++q+G++ W+ Iar ++ gRt++ +k++w+
  FANhyb_rscf00004702.1.g00001.1  96 KDAWTEDEERMLVFYHQQFGNK-WAEIARFLP-GRTDNAIKNHWN 138
                                     689*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-16152IPR009057Homeodomain-like
SMARTSM007171.9E-4141IPR001005SANT/Myb domain
CDDcd001672.45E-9139No hitNo description
PROSITE profilePS5129412.974139IPR017930Myb domain
SuperFamilySSF466899.33E-10148IPR009057Homeodomain-like
PfamPF002493.9E-11138IPR001005SANT/Myb domain
PROSITE profilePS5129428.2924094IPR017930Myb domain
SuperFamilySSF466891.22E-3042137IPR009057Homeodomain-like
SMARTSM007171.1E-174492IPR001005SANT/Myb domain
PfamPF002492.1E-174590IPR001005SANT/Myb domain
CDDcd001672.21E-144890No hitNo description
Gene3DG3DSA:1.10.10.602.7E-255398IPR009057Homeodomain-like
SMARTSM007175.4E-1495143IPR001005SANT/Myb domain
PROSITE profilePS5129419.18495145IPR017930Myb domain
PfamPF002495.0E-1496138IPR001005SANT/Myb domain
CDDcd001671.54E-1198138No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2099143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
DKLLVDLVRK FNGSNWKQIA AGIPGRSDVQ CQHRWQKVVN PEIIKGYWTV EEDDCIIKLV  60
EKYGARWSFI AKFLPGRIGK QCRERWYNHL SPAINKDAWT EDEERMLVFY HQQFGNKWAE  120
IARFLPGRTD NAIKNHWNGA FKRRREDSYS PNGSECHMHT DNACSTELTL EAMCYSLGVK  180
ISGYCKQIAD HTVEDRSFPN SPLVFMDSST FTNSNCTPPK IQYCYSTHPK NVQNVYASST  240
SPKSRLKSLA RTFKNTPSII RKRASRTADH TNSSGANCST AFNILSLGEA CINSTYSNSS  300
DYVRGLSSMR HRRETSEAHK SLGRCLELEF DDENDSGVAN CGEVSSAYVG A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-62114414158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-62114414158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300765.10.0PREDICTED: myb-related protein 306-like
TrEMBLA0A2P6P7A00.0A0A2P6P7A0_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004300765.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.21e-65myb domain protein 3r-3