PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004806.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 259aa    MW: 28944.8 Da    PI: 7.5024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004806.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.4e-1487132454
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     +h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+ve +k+L
  FANhyb_rscf00004806.1.g00001.1  87 NHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVERVKEL 132
                                     8*************************8.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.73283132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1187132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1487141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-1387135No hitNo description
SuperFamilySSF474591.44E-1487142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-1289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.2E-5173236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MQPKNQELYR FLAQNGLING HLYGSYTGGV ANCEFSSSSS AVPLQQSFCS SSSYYSNKDA  60
LNNLEVSEVL STTTTTPHDR ALAALNNHKE AEKRRRERIN SHLDKLRSLL PCNSKTDKAS  120
LLAKVVERVK ELKQQMSEIT ELETFPSEAD EITVLCSSED EYSNNGGIIF KASLSCEDRP  180
ELLPDLIEIL KSLHLKTLKA EMATLGGRIR SVLIVAADKD HTIESVPFLQ NAFKSLLERS  240
NSSERSKRRR RVLDPTLLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251KRRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459488.11e-157PREDICTED: transcription factor bHLH106
SwissprotO806741e-71BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2P6QFV91e-145A0A2P6QFV9_ROSCH; Putative transcription factor bHLH family
STRINGXP_004291761.11e-140(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.15e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]