PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00004825.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 233aa MW: 26822.7 Da PI: 10.0435

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00004825.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.9	6.4e-26	98	147	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l dl kyF+ pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl FANhyb_rscf00004825.1.g00001.1 98 SKITLPDLVKYFDIPIVEASRSLNVGLTVLKKKCREFGIPRWPHRKIKSL 147 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.713	81	167	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-21	99	147	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
NPQLKLIPNL AKDLQVVGEM TCIKDEKEPL QKSDEETSQG NDGNYCQLRT SLPMLDLDLN 60 RSPCSVTVSE SSDDQESGRQ SPGNIEKKNR RAASERISKI TLPDLVKYFD IPIVEASRSL 120 NVGLTVLKKK CREFGIPRWP HRKIKSLDSL IRDLQSFIVT SVQEETEFQQ KENKDAALAV 180 AKRQRMLERE RESIERKPFL DMKIETKRFR QDVFKRRHRA RVLRSQGLSL SGN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289044.1	1e-158	PREDICTED: protein RKD5
Swissprot	O81791	9e-55	RKD5_ARATH; Protein RKD5
TrEMBL	A0A2P6RLA9	1e-138	A0A2P6RLA9_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004289044.1	1e-157	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-57	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]