PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004923.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 131aa    MW: 15107.9 Da    PI: 4.9065
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004923.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.62.6e-1518117698
                             NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiyk...vePwdLpkkvka.....eekewyfFskrdkkyatgkrknr 76 
                                      F+P+d+elv  yL  kv  ++ +   +++e++iy    + Pw++ + +++     +++ +yfFs+++k ++++ r++r
  FANhyb_rscf00004923.1.g00001.1  18 TFQPSDDELVGVYLYSKVFVSTYKQ--TFPEIRIYGkdgMPPWEIWR-IYQqsrfpHQDFIYFFSPAEKMNPNKARQSR 93 
                                     6******************999666..56777776512268****73.3331233333456****************** PP

                             NAM  77 .atksgy.Wkatgkdkevlskkge 98 
                                      + ++gy W+at + k+++++++e
  FANhyb_rscf00004923.1.g00001.1  94 kVGTDGYtWSATERVKPIYVAGNE 117
                                     55557878***********97443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-1310117IPR003441NAC domain
PROSITE profilePS5100515.18513131IPR003441NAC domain
PfamPF023651.0E-718109IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MDQQFATLDQ LSVGAVTTFQ PSDDELVGVY LYSKVFVSTY KQTFPEIRIY GKDGMPPWEI  60
WRIYQQSRFP HQDFIYFFSP AEKMNPNKAR QSRKVGTDGY TWSATERVKP IYVAGNEEAF  120
GVSVREEGEQ G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464582.12e-55PREDICTED: uncharacterized protein LOC105351558 isoform X2
RefseqXP_011464583.12e-55PREDICTED: uncharacterized protein LOC105351558 isoform X3
RefseqXP_011464584.12e-55PREDICTED: uncharacterized protein LOC105351558 isoform X4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1646726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-08NAC domain containing protein 2