PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005094.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 380aa    MW: 41420.6 Da    PI: 8.8786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005094.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.6e-16178224455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      hn  ErrRRdriN+++ +L+el+P +      K +Ka++Le+A+eY+ksLq
  FANhyb_rscf00005094.1.g00001.1 178 VHNLSERRRRDRINEKMRTLQELIPRC-----NKSDKASMLEEAIEYLKSLQ 224
                                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-20171232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-21172240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.07174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-16177228No hitNo description
PfamPF000104.9E-14178224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-17180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
PRRSEAQNFL LFSRLNSNNN NKSRFDSVAA APRSVVREMT TVVDSSDTPL VGPYSRATES  60
RLDNNASPGI SMSGGGGRGL ATATTATAAS DGKDALTCET SLTSSPGGGS TSASGSLSAE  120
LVSTQKPPPP PVDRKRKGRE REPDDAECQS EDVEFESGSA KKVNRGSSST KRSRAAEVHN  180
LSERRRRDRI NEKMRTLQEL IPRCNKSDKA SMLEEAIEYL KSLQLQVQMM SMGCGMVPMM  240
FPGVQPYMPM GMARMGMGME MGMNRPMMPY GNVLAGSPMP TAAAAAHMRP RFPMPAYPMQ  300
TMLPNDPNRV QATNQSEHML NPLGTESQNQ TRGPNFADPY QQYFTPQQMQ MQLHQNQAMA  360
QPSSSQPSSS MGPENQESHQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458065.10.0PREDICTED: transcription factor PIF1
TrEMBLA0A2P6PUJ41e-154A0A2P6PUJ4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292266.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-33phytochrome interacting factor 3