PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005522.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family DBB
Protein Properties Length: 285aa    MW: 30626 Da    PI: 4.2171
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005522.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box193e-06444539
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                    +C+ +++++   +C+++  +lC +C  + H+       H++
  FANhyb_rscf00005522.1.g00001.1  4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                                    7*****************************65677777776 PP
2zf-B_box25.43e-084689441
                        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                                      C++++++++   C++ ++ lC++C   +H g       H++++
  FANhyb_rscf00005522.1.g00001.1 46 LLCERCNSQPALVRCTEERVSLCQNCDWMGH-GastsaasHKRQT 89
                                    57*****************************.5588888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.684147IPR000315B-box-type zinc finger
SMARTSM003363.1E-8447IPR000315B-box-type zinc finger
CDDcd000211.40E-6447No hitNo description
PROSITE profilePS501199.24390IPR000315B-box-type zinc finger
CDDcd000211.94E-44790No hitNo description
SMARTSM003360.54890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
TEERVSLCQN CDWMGHGAST SAASHKRQTL NCYSGCPSAS ELSSIWSFVL DLPSASVGES  120
ACEQEMGLMS IAENSTGSAC SPQENNNREN ASDTFEVNDV CAMDKSDGLV GSSSAPALNL  180
APQVVGQMPG SANSTLPKLY CHGTKGPGLC EDDDLYGDFD MDEMDLNLEN YDELFGVSLN  240
HSEELFKNGG IDSLFGAKNM SRAQELIAAE VISSSFFLAE GVCIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303586.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE52e-92COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2P6S1A10.0A0A2P6S1A1_ROSCH; Putative transcription factor interactor and regulator Znf-B family
STRINGXP_004303586.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.48e-95CONSTANS-like 9