PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005545.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29579.5 Da    PI: 10.1592
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005545.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.91e-26959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krien + rqvtfskRr+gilKKA+ELSvLCd+eva+i+fs++gk y y+s
  FANhyb_rscf00005545.1.g00001.1  9 KRIENPISRQVTFSKRRTGILKKAFELSVLCDTEVALIVFSPSGKPYLYAS 59
                                    79*******************************************998875 PP
2K-box54.64.7e-19901751398
                           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                                      ++ ++ e + L++ ++nL+  +++l G +L+ L ++e++qLe+qL+++l++iRs+   ++ e+i+ l++k ++lqeen
  FANhyb_rscf00005545.1.g00001.1  90 MEQLWRYETEELRRLTQNLEMRLKNLAGAELSMLGMQEIKQLERQLKTGLERIRSRMRWIISENISLLKRKHQALQEEN 168
                                     5688999************************************************************************ PP

                           K-box  92 kaLrkkl 98 
                                      +L+k++
  FANhyb_rscf00005545.1.g00001.1 169 ARLQKRV 175
                                     ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.543161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-30279IPR002100Transcription factor, MADS-box
CDDcd002653.66E-36278No hitNo description
PRINTSPR004041.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014865.9E-1689175IPR002487Transcription factor, K-box
PROSITE profilePS5129710.94691181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGKVELKR IENPISRQVT FSKRRTGILK KAFELSVLCD TEVALIVFSP SGKPYLYASH  60
DINRTIAMYR SEVGLHQSSN PACSTRIRTM EQLWRYETEE LRRLTQNLEM RLKNLAGAEL  120
SMLGMQEIKQ LERQLKTGLE RIRSRMRWII SENISLLKRK HQALQEENAR LQKRVRVYLP  180
AFCFVALYMN QRCVLENPDY IKLTERVASL NLKIWALLFV AIDICSCNAV CKQASNTDRF  240
HDQTPWSMSY ISST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-19178178MEF2 CHIMERA
6byy_B1e-19178178MEF2 CHIMERA
6byy_C1e-19178178MEF2 CHIMERA
6byy_D1e-19178178MEF2 CHIMERA
6bz1_A1e-19178178MEF2 CHIMERA
6bz1_B1e-19178178MEF2 CHIMERA
6bz1_C1e-19178178MEF2 CHIMERA
6bz1_D1e-19178178MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463249.11e-116PREDICTED: MADS-box transcription factor 23-like isoform X1
TrEMBLA0A0D4ZYR59e-84A0A0D4ZYR5_PYRPY; TM8-like MADS-box protein
TrEMBLM5WZH55e-84M5WZH5_PRUPE; Uncharacterized protein
STRINGXP_004297587.11e-115(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-40AGAMOUS-like 20