PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005567.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 101aa    MW: 11198.8 Da    PI: 10.6034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005567.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.1e-194388147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    rg W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw++ 
  FANhyb_rscf00005567.1.g00001.1 43 RGVWSQEEDRILSRLVSKFGARNWTLIARGIP-GRCGKSCRLRWFNQ 88
                                    899*****************************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0743893IPR017930Myb domain
SuperFamilySSF466897.59E-183999IPR009057Homeodomain-like
SMARTSM007173.5E-154291IPR001005SANT/Myb domain
PfamPF002495.9E-184389IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-224599IPR009057Homeodomain-like
CDDcd001671.15E-144687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MEPELAEDSA AVIGIDASED DVGSGKDAVA KGEKGKKRKS RVRGVWSQEE DRILSRLVSK  60
FGARNWTLIA RGIPGRCGKS CRLRWFNQLD PILKRKPFSG N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-154299663B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302679.12e-61PREDICTED: transcription factor LAF1
SwissprotO041922e-24MYB25_ARATH; Transcription factor MYB25
TrEMBLA0A2P6R9E26e-42A0A2P6R9E2_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004302679.16e-61(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2009255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.19e-26myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]