PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005798.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 368aa    MW: 41324.6 Da    PI: 5.8028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005798.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-16552148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
  FANhyb_rscf00005798.1.g00001.1  5 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 52
                                    678*******************************************97 PP
2Myb_DNA-binding46.39.8e-1558101146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  FANhyb_rscf00005798.1.g00001.1  58 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 101
                                     788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.948156IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-23155IPR009057Homeodomain-like
SuperFamilySSF466896.74E-29399IPR009057Homeodomain-like
SMARTSM007174.1E-12454IPR001005SANT/Myb domain
PfamPF002492.4E-14552IPR001005SANT/Myb domain
CDDcd001673.78E-11852No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2556107IPR009057Homeodomain-like
SMARTSM007172.4E-1357105IPR001005SANT/Myb domain
PROSITE profilePS5129419.64557107IPR017930Myb domain
PfamPF002499.3E-1458102IPR001005SANT/Myb domain
CDDcd001672.14E-1061100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
QKLRKGLWSP EEDEKLFNYI TRFGVGCWSS VPKLAGLQRC GKSCRLRWIN YLRPDLKRGM  60
FSQQEEDLII SLHEVLGNRW AQIAAQLPGR TDNEIKNFWN SCLKKKLMKQ GIDPTTHKPL  120
TDEELLKDDK TNIVHCSELN NESSSSLPLM PAHEHHQELI PMANSSQGPT FLVNESSYFD  180
GTSTGMSTTQ GSRAVAAFDS TLSYFEFQSS IDPSGYNSDF VTSTQYHPPT TNSIRPSFNY  240
EAIIGYNSMP SLANSDHGSM SGATDFSFSS SNSSTTGFHM NHNNNVVENN AGAFSWDVNT  300
ENKLESLFHQ FNGPKSEDLV MMKPNSSSWE EGQLHHHQHQ NSVDFSSYPL TSLSEDLTGA  360
NFDVFQHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2831075108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299133.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A2P6P5M70.0A0A2P6P5M7_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004299133.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-76myb domain protein 86