PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005962.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 230aa    MW: 26044.9 Da    PI: 5.0121
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005962.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-181461148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WTteEd++l+ +++ +G g+W++ +++ g+ R++k+c++rw +yl
  FANhyb_rscf00005962.1.g00001.1 14 KGPWTTEEDQILISYIQTYGHGNWRALPKHAGLLRCGKSCRLRWINYL 61
                                    79******************************99************97 PP
2Myb_DNA-binding50.74.1e-1667112148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg+++ eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  FANhyb_rscf00005962.1.g00001.1  67 RGNFSREEEDAIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.251961IPR017930Myb domain
SuperFamilySSF466893.59E-3110108IPR009057Homeodomain-like
SMARTSM007174.4E-151363IPR001005SANT/Myb domain
PfamPF002496.2E-171461IPR001005SANT/Myb domain
CDDcd001675.15E-121661No hitNo description
PROSITE profilePS5129425.08562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2665117IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002496.1E-1567112IPR001005SANT/Myb domain
CDDcd001671.03E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTTE EDQILISYIQ TYGHGNWRAL PKHAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SREEEDAIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLIKQD  120
NTTSPTCSTS NLTSQYAEPE YVNFESTTSH ASMSPQPSSS EDVSSVTEAS AATSQNMIKD  180
EKIELDATFS DFDDSFWSEA LSADNSGDIS LEFLEGTNDQ AQPELPFEHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296369.11e-165PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX84e-80MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2P6QQV91e-151A0A2P6QQV9_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004296369.11e-165(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-79myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]