PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006321.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24990.8 Da    PI: 10.3488
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006321.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.43.2e-171150342
                                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                    i n+s r+ tf kR++g++KK +EL +LCd++++ ii+s+
  FANhyb_rscf00006321.1.g00001.1 11 ITNDSARKATFKKRKKGLMKKVSELTTLCDIDACAIIYSP 50
                                    89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.465149IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-25160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-25295IPR002100Transcription factor, MADS-box
CDDcd002661.18E-21285No hitNo description
PRINTSPR004041.7E-10323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTRKKVKLTY ITNDSARKAT FKKRKKGLMK KVSELTTLCD IDACAIIYSP YDSQPEVWPS  60
PLGVHRVLAQ FKTMPEMEQS KKMVNQETFL RQRINKAQEQ LKKQKKDNRE KEMARVMFQS  120
LTGKTLQGLT MSDLTDLNWV IDQHMKEIQL RMKNIKEGAV KSQNQVQGSQ GVPAAVDHKN  180
TTMKSNGEGS SNNMAMKSGE EGSNMEHAIL DRQAFDHIQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLTYITNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466212.11e-158PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-59AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2P6R7W11e-131A0A2P6R7W1_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004304924.11e-159(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-61AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]