PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00006742.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 686aa MW: 78916.7 Da PI: 8.632

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00006742.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.4	3.9e-26	7	96	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtk 80 kfYn+Y++++GFs+rk++ +++k++g+ ++r fvCskeg re +k++ + +++traetr++C+a++ +k++k +gk+ v++ FANhyb_rscf00006742.1.g00001.1 7 KFYNRYGRSAGFSIRKHTYYRNKKSGKLISRIFVCSKEGLREADKRH-HLTKNTRAETRISCDARMSIKLDKsSGKYIVYQ 86 6*****************************************999.99*****************99**** PP FAR1 81 leleHnHela 90 +e+ H+H+l+ FANhyb_rscf00006742.1.g00001.1 87 FEETHSHDLV 96 ******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-22	7	96	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-32	218	312	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.126	500	533	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.5E-6	503	529	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.0E-6	508	536	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
SEQSAYKFYN RYGRSAGFSI RKHTYYRNKK SGKLISRIFV CSKEGLREAD KRHHLTKNTR 60 AETRISCDAR MSIKLDKSSG KYIVYQFEET HSHDLVTQEC AYMLPSQRNV TPPQGAEMVL 120 VKDSGVPLKL AFELMSREVG GRESLGFTRQ DHKNYLQSQR QKKLAYGEAG CLLKYFQNQA 180 LENPSFFYAV QLDSDEQITN IFWADARMIV DYGLFGDVVS FDTTYKTNEA NRPFGVFVGF 240 NHHRETVIFG AALMYDETSD SFTWLFETFL EAMSNKAPKS IFTDQDAAMA KACANVMPNT 300 YHMLCTWHIM NNAIKNASSI FKGDDQVTAF LSTCMKSYEE EDEFLHAWEE MLNTYNAHGN 360 PWLSSIFRLK EKWAKPYVKW AWSAGMHNTQ LSESFNASLK PYVKSDYDVV EFFKHFDRLL 420 NDKRYKELEA EYALCYKLPT VAIFTSMVIK AGNTYTKAIF DEFQIQYEKS LDYNLVGCIQ 480 DGDDIVFKVA FNGHPKERCV RVKRDNTVSC SCRLFEIEGI LCRHAIKILT NYMNVKEIPD 540 QYVLKRWTRK ARSESVKDMH GCDIQVDTNL QQTSWYKSLS SISTKISSRA AEREETYKFA 600 VHQLGELSKA IEGMLCAKMD ALQLGKDDQV TPSTIVNDTN VACHSNKGKV IQAKGFKKRD 660 SARGRKRRII GDFEKKHGQV SEREVS

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

SEQSAYKFYN RYGRSAGFSI RKHTYYRNKK SGKLISRIFV CSKEGLREAD KRHHLTKNTR  60
AETRISCDAR MSIKLDKSSG KYIVYQFEET HSHDLVTQEC AYMLPSQRNV TPPQGAEMVL  120
VKDSGVPLKL AFELMSREVG GRESLGFTRQ DHKNYLQSQR QKKLAYGEAG CLLKYFQNQA  180
LENPSFFYAV QLDSDEQITN IFWADARMIV DYGLFGDVVS FDTTYKTNEA NRPFGVFVGF  240
NHHRETVIFG AALMYDETSD SFTWLFETFL EAMSNKAPKS IFTDQDAAMA KACANVMPNT  300
YHMLCTWHIM NNAIKNASSI FKGDDQVTAF LSTCMKSYEE EDEFLHAWEE MLNTYNAHGN  360
PWLSSIFRLK EKWAKPYVKW AWSAGMHNTQ LSESFNASLK PYVKSDYDVV EFFKHFDRLL  420
NDKRYKELEA EYALCYKLPT VAIFTSMVIK AGNTYTKAIF DEFQIQYEKS LDYNLVGCIQ  480
DGDDIVFKVA FNGHPKERCV RVKRDNTVSC SCRLFEIEGI LCRHAIKILT NYMNVKEIPD  540
QYVLKRWTRK ARSESVKDMH GCDIQVDTNL QQTSWYKSLS SISTKISSRA AEREETYKFA  600
VHQLGELSKA IEGMLCAKMD ALQLGKDDQV TPSTIVNDTN VACHSNKGKV IQAKGFKKRD  660
SARGRKRRII GDFEKKHGQV SEREVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024166092.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008351321.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-113	FAR1-related sequence 5