PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006795.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 265aa    MW: 30055.4 Da    PI: 4.7682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006795.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19100149255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +++GVr+++ +grW+AeIrdp++   rkr +lg+f taeeAa  +++a+ kl+g
  FANhyb_rscf00006795.1.g00001.1 100 QFRGVRQRP-WGRWAAEIRDPVQ---RKRLWLGTFNTAEEAAIIYDRAAVKLRG 149
                                     79*******.**********755...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381239.6E-681264IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.51E-3399159No hitNo description
Gene3DG3DSA:3.30.730.101.5E-30100158IPR001471AP2/ERF domain
SMARTSM003802.4E-38100163IPR001471AP2/ERF domain
PROSITE profilePS5103223.828100157IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23100159IPR016177DNA-binding domain
PRINTSPR003678.6E-10101112IPR001471AP2/ERF domain
PfamPF008476.5E-12101149IPR001471AP2/ERF domain
PRINTSPR003678.6E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAKFSEHVIS VSKFVQENTH LEKTRLLQKR VRIILTDPDA TDSDSDDDES SSTAVRRVKR  60
HVKEISFEPA SSSFKLPKRE IPETRPDPKS PDSDPARKKQ FRGVRQRPWG RWAAEIRDPV  120
QRKRLWLGTF NTAEEAAIIY DRAAVKLRGP DAVTNFPNSV TTEVETVVVA EEVPTAHEEE  180
RSFGSTATCD SLANEEPALS PTSVLRYDDP APFGGFRYCD DVHDFRFEYD VPSLNLPDIM  240
VPANNFNHDE FGEFDVNDFL VDVIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2296162168ATERF1
3gcc_A6e-2296162168ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294718.11e-161PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A3S8T9351e-160A0A3S8T935_FRAAN; Transcription factor ERF50
STRINGXP_004294718.11e-160(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-35cytokinin response factor 4