PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006856.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 223aa    MW: 24437.8 Da    PI: 8.5689
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006856.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.48.6e-402080262
                          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                                    ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkks+
  FANhyb_rscf00006856.1.g00001.1 20 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKST 80
                                    6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-261574IPR003851Zinc finger, Dof-type
PfamPF027017.3E-342278IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0962478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEENMASDAA RLASEKRARP QEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE  60
GGTLRNVPVG GGSRKNKKST SSTASSSAIS SSKNIIPDLN PPSLSHFSSQ NPRMTHEGQD  120
LNLAFSANVE HYSGTSTAHY VDHHQVPKME SNNSSALELL RSTGIASRGV NSYIPNSMQD  180
SNAVLYSSSG FALQEFKPSQ LGFCVDGLGS RYSDHPQENG GSG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306645.11e-165PREDICTED: dof zinc finger protein DOF3.7
SwissprotQ433859e-62DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A2P6SIQ81e-145A0A2P6SIQ8_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004306645.11e-165(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.42e-60Dof family protein