PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006918.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 155aa    MW: 17120.8 Da    PI: 10.3295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006918.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000942749123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    +kC+ C++ Fs+   L  H  +H
  FANhyb_rscf00006918.1.g00001.1 27 FKCKTCNREFSSFQALGGHTASH 49
                                    89**********99998888777 PP
2zf-C2H2163.5e-057698123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    ++C+ Cg +Fs+   L  H+r+H
  FANhyb_rscf00006918.1.g00001.1 76 HECSVCGLVFSSGQALGGHMRRH 98
                                    78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-92698No hitNo description
PfamPF139126.4E-122651IPR007087Zinc finger, C2H2
SMARTSM003550.212749IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3672754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-47498IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-127699IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4737698IPR007087Zinc finger, C2H2
SMARTSM003550.00967698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEKVLMLLSC RLETKFKRSS SSPNDVFKCK TCNREFSSFQ ALGGHTASHK KPRTLTDSDQ  60
DSKSETKSAQ TKPKKHECSV CGLVFSSGQA LGGHMRRHRT IDAGFVSSAP PAVVSKIPVL  120
MRSNSKRVMC LDMDLNLTPL ENDLKLLFGN MATKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024190787.12e-88zinc finger protein ZAT11-like
SwissprotQ9SLD43e-35ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2P6RA884e-87A0A2P6RA88_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004302781.16e-86(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.19e-39C2H2 family protein