PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006954.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 272aa    MW: 31191.5 Da    PI: 9.4277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006954.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.9e-17155242195
                                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                     f+k +++s+     +l+lp++f+  h      ++ t+tled++g+++e ++  +k+     l++GWk+F++a++L+  D
  FANhyb_rscf00006954.1.g00001.1 155 FIKSMIRSNIAVCFMLTLPRRFCHLHlP--LYGTATITLEDKEGKEFETNFLADKRA----LSGGWKGFCQAKDLRLDD 227
                                     88999999999999*********66652..446779***************555554....9***************** PP

                                     EEEEEE-SSSEE..EEE CS
                              B3  79 fvvFkldgrsefelvvk 95 
                                     ++vF+l++  +f  +v+
  FANhyb_rscf00006954.1.g00001.1 228 VLVFQLVSPLKF--KVH 242
                                     *****9874443..554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-21151246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-18152247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-24153245No hitNo description
PROSITE profilePS5086312.52155247IPR003340B3 DNA binding domain
SMARTSM010192.2E-16155247IPR003340B3 DNA binding domain
PfamPF023623.1E-14155242IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MICIREAFST SNRPYHGSTN WTSRSDVATV RLRKTEKMSE YSRGSALRPA ISRFSPTQIV  60
KFHNLTLNAP NLEQRQPLEE ANKYGFKTPE RKRHLSPSLN TNAEISSDPQ KHGGCKRSRT  120
NRSMSWHFGH PEESPDRSQV KEIPENLEAD GFPFFIKSMI RSNIAVCFML TLPRRFCHLH  180
LPLYGTATIT LEDKEGKEFE TNFLADKRAL SGGWKGFCQA KDLRLDDVLV FQLVSPLKFK  240
VHKLRPEYDL NEEDVDAAFV LLKMSTSEQT LL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461498.10.0PREDICTED: uncharacterized protein LOC101300235 isoform X1
TrEMBLA0A2P6PMI71e-137A0A2P6PMI7_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004296077.11e-178(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3482822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-25B3 family protein