PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006990.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 546aa    MW: 59974.3 Da    PI: 5.818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006990.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.42.2e-1301595211374
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77 
                                     lv+lL++cAe v+ gdl+la +++++++ l  + +++  + ++a yf  AL++r++          ++ +++  +  e+
  FANhyb_rscf00006990.1.g00001.1 159 LVQLLVTCAESVQRGDLALAGSIIETMQALltRVNTACGIGKVAGYFIDALSRRVFT--------PRSVTSDGGSAHEN 229
                                     689**************************96555566799****************9........23333333346677 PP

                            GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgske 156
                                        +++f+ev+P+lkf+h+taNqaI ea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ ++
  FANhyb_rscf00006990.1.g00001.1 230 ELLYHYFYEVCPYLKFAHFTANQAIHEAFHGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRD 308
                                     78899************************************************************************** PP

                            GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                     +l+e+g rLa++A++++v+f f+ ++a+rled+++++L+v+p+Ea+aVn+++qlhrll   ++ + +++ +L  +++l+
  FANhyb_rscf00006990.1.g00001.1 309 SLREIGLRLAELARSVNVRFAFRGVAASRLEDVKPWMLQVSPKEAVAVNSIMQLHRLL---GPDSTRIEMMLGWIRKLN 384
                                     **********************************************************...555555679********* PP

                            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                                     Pk+v+vveqeadhn++ Flerf+eal+yys +fdslea    + + ++++ +++++rei+nvv+ceg +r+erhe l+k
  FANhyb_rscf00006990.1.g00001.1 385 PKIVTVVEQEADHNKPGFLERFTEALYYYSNMFDSLEAC--GAMQPDKTLAEMYIQREICNVVCCEGVARVERHEPLAK 461
                                     ************************************998..4567788888899************************* PP

                            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     Wr rle+aGF+p++l+++a+kqa++ll  ++ +gyrvee++g+l++gW++rpL+++SaW+
  FANhyb_rscf00006990.1.g00001.1 462 WRTRLEQAGFRPLHLGSNAYKQASMLLTLFSAEGYRVEEKEGCLTIGWHSRPLIAASAWQ 521
                                     ***********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.5E-1636110No hitNo description
PfamPF120416.1E-283697IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098563.61133501IPR005202Transcription factor GRAS
PfamPF035147.7E-128159521IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
TAQRWSPTIP VAASAAAASS SSSSSATSIT KPQEMDGYLA EAGYKVRSSD LRHVAQRLER  60
LENVMVNSHD DLAQFASDAV IYNPSDMASW VDSLLSASDF NAPDLDFADA IMTDPTAAFP  120
ADTWSDIPPP ISTAAPPPMQ NHQQITSFTA MEEDSGIRLV QLLVTCAESV QRGDLALAGS  180
IIETMQALLT RVNTACGIGK VAGYFIDALS RRVFTPRSVT SDGGSAHENE LLYHYFYEVC  240
PYLKFAHFTA NQAIHEAFHG HDCVHVIDFN LMHGLQWPAL IQALALRPGG PPLLRLTGIG  300
PPSPDGRDSL REIGLRLAEL ARSVNVRFAF RGVAASRLED VKPWMLQVSP KEAVAVNSIM  360
QLHRLLGPDS TRIEMMLGWI RKLNPKIVTV VEQEADHNKP GFLERFTEAL YYYSNMFDSL  420
EACGAMQPDK TLAEMYIQRE ICNVVCCEGV ARVERHEPLA KWRTRLEQAG FRPLHLGSNA  480
YKQASMLLTL FSAEGYRVEE KEGCLTIGWH SRPLIAASAW QVMPLPEATA TATNPLGIVN  540
HSANLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6215252011377Protein SCARECROW
5b3h_D1e-6215252011377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287380.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ84TQ71e-155GAI_GOSHI; DELLA protein GAI
TrEMBLA0A2P6RJ970.0A0A2P6RJ97_ROSCH; Putative transcription factor GRAS family
STRINGXP_004287380.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-137GRAS family protein