PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006996.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 94aa    MW: 10586 Da    PI: 8.5173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006996.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52.1e-0724601854
                                    HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                             HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                    +  ++Lr+l+P+ +   +s K+s + +L++++ YI++L
  FANhyb_rscf00006996.1.g00001.1 24 ELVSKLRQLVPEiR-DRRSDKVSASKVLQETCSYIRNL 60
                                    56689*******76.99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.921660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-82176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-92279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-52460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSRRSSRQS SSGSPSIKDD QIIELVSKLR QLVPEIRDRR SDKVSASKVL QETCSYIRNL  60
HREVDDLSER LSQLLATIDA DSAEAAIIRS LIMQ
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215199.13e-50transcription factor PRE6
RefseqXP_008230751.13e-50PREDICTED: transcription factor PRE6-like
RefseqXP_020416554.13e-50transcription factor PRE6
RefseqXP_021818928.13e-50transcription factor PRE6-like
SwissprotQ9LJX12e-37PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A314YUW47e-49A0A314YUW4_PRUYE; Transcription factor PRE6
TrEMBLM5X4F07e-49M5X4F0_PRUPE; Uncharacterized protein
STRINGXP_008230751.11e-49(Prunus mume)
STRINGEMJ163981e-49(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-37bHLH family protein