PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00007015.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 225aa    MW: 25974.2 Da    PI: 7.4853
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00007015.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-051741123
                                    EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                                    ++C+   Cgk+F   s L++H  +H
  FANhyb_rscf00007015.1.g00001.1 17 HVCQepGCGKVFQFASKLRKHEDSH 41
                                    689999***************9888 PP
2zf-C2H213.80.00017108132223
                                     EET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                     kC+   C  +F+ ksnL +H +  H
  FANhyb_rscf00007015.1.g00001.1 108 KCEyeGCLHTFTKKSNLLQHVKAvH 132
                                     79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-81241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.22E-51342No hitNo description
SMARTSM003550.0351741IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0971746IPR007087Zinc finger, C2H2
PROSITE patternPS0002801941IPR007087Zinc finger, C2H2
SMARTSM003551.24974IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805174IPR007087Zinc finger, C2H2
SMARTSM00355147798IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.96E-888149No hitNo description
PROSITE profilePS5015711.967107137IPR007087Zinc finger, C2H2
SMARTSM003550.013107132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-5108134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280109132IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-6135158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.7138164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933138164IPR007087Zinc finger, C2H2
PROSITE patternPS000280140164IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
FHSEDCPSTG VEGQKQHVCQ EPGCGKVFQF ASKLRKHEDS HVKLDSVEAF CSEPDCMKYF  60
SNKQCLQEHI QSCHTHVACE ICEKKVWKKN IRSHLRTHEE GASSLEIKCE YEGCLHTFTK  120
KSNLLQHVKA VHLQQKPYAC SFSGCGKTFS YKHVRDKHEN SGCHVYAYGD FEEADEQFRS  180
RPRGGRKRIC PTVEMLVRKR VTPPDQFGPE TEFLSQLFSQ EEDER
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287098.11e-160PREDICTED: transcription factor IIIA-like isoform X1
RefseqXP_004287099.11e-161PREDICTED: zinc finger protein 11-like isoform X3
SwissprotQ84MZ42e-87TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2P6RJH41e-149A0A2P6RJH4_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004287098.11e-160(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-90transcription factor IIIA