PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00007016.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 255aa    MW: 26766.1 Da    PI: 8.6534
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00007016.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-085580227
                                    -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                    kt+lC+ +     Ck+Gd+C+FaHg+
  FANhyb_rscf00007016.1.g00001.1 55 KTRLCNKYNSAEGCKFGDKCHFAHGE 80
                                    8***********************96 PP
2zf-CCCH37.53.9e-12222246126
                                     --S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                     y+t+lC++fa+ GtC +G+rC+FaHg
  FANhyb_rscf00007016.1.g00001.1 222 YRTKLCDNFAK-GTCTFGERCHFAHG 246
                                     89*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.047117IPR000571Zinc finger, CCCH-type
PfamPF146081.3314No hitNo description
Gene3DG3DSA:4.10.1000.103.7E-145185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-85284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.925381IPR000571Zinc finger, CCCH-type
SMARTSM003560.00255380IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-65580IPR000571Zinc finger, CCCH-type
SMARTSM003226.9E-12126196IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.109.6E-17126197IPR004088K Homology domain, type 1
PROSITE profilePS5008414.403127191IPR004088K Homology domain, type 1
PfamPF000135.3E-12129193IPR004088K Homology domain, type 1
CDDcd001058.06E-15129196No hitNo description
SuperFamilySSF547911.18E-15129222IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.0E-16217253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464221248IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8221247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-8221251IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9222246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
TAGCPFGESC HFLHYVPGGY NAVAQVMNLA PPPQSSRSFA GPPSHSNGSS SPTAKTRLCN  60
KYNSAEGCKF GDKCHFAHGE RELGKPVSQS YGHDDPRAMA PAPGRMGNWM EPGHAPMQGP  120
ASSFGASSTA KISVDASLAG AIIGKGGVNS KHICHQTGAK LAIRDHESDP NLRNIELEGT  180
FEQIQQASTL VRELIQSVLM SGPNKTPGRG APGAPAPPGS NYRTKLCDNF AKGTCTFGER  240
CHFAHGAAEL RKPGM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468049.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_011468050.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ69XQ31e-91C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2P6RDK51e-171A0A2P6RDK5_ROSCH; Putative transcription factor C3H family
STRINGXP_004304369.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-64C3H family protein