PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00007203.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ZF-HD
Protein Properties Length: 252aa    MW: 27490.6 Da    PI: 6.9197
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00007203.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.11.9e-3252106358
                     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                     ++rY+eClkNhA+++Ggha+DGCgEf+++ geeg+ +alkCaAC+CHRnFHR+e++
  FANhyb_rscf00007203.1.g00001.1  52 TIRYRECLKNHAVNIGGHALDGCGEFLAA-GEEGSLDALKCAACNCHRNFHRKEPA 106
                                     689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2420104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-2953105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.8E-2954104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.41855104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.47E-21175250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-32179251IPR009057Homeodomain-like
TIGRFAMsTIGR015654.6E-28189245IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEFNDHHEDQ DEDMELSPAA PTPPGYDASR SKMGPTSGGE EEMAPPEKRV PTIRYRECLK  60
NHAVNIGGHA LDGCGEFLAA GEEGSLDALK CAACNCHRNF HRKEPAEGGG GGATIAHQQH  120
SQQQPFSAYY RHPYPPPPPS GYLHLTPAQP HRPLALPAAA GSGGSHSREE LDDVSNPSSS  180
GGGGSGLLRK RFRTKFTAEQ KEKMVEFAEK VGWRIQKHDE AAVEEFCAET GVKRQVLKVW  240
MHNNKHTIGK KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-301902471875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299701.11e-149PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ9SB613e-79ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A059BKP61e-99A0A059BKP6_EUCGR; Uncharacterized protein
STRINGXP_004299701.11e-148(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-74homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]