PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00007245.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24937.5 Da    PI: 10.6451
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00007245.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.46.6e-1227581546
                                    HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                          SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl 46
                                     R++ ++KKAeELS LC+++v++i++  + ++
  FANhyb_rscf00007245.1.g00001.1 27 DRKKNVFKKAEELSKLCGVDVCLILYQRQSNI 58
                                    6***********************99876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.8531265IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-102480IPR002100Transcription factor, MADS-box
PfamPF003191.4E-92855IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTFRNMDPQR NIQQLSSSKS DRKKVRDRKK NVFKKAEELS KLCGVDVCLI LYQRQSNIAE  60
TWPQDPEQVK RIVAGYKANP AIRDASIPSS EIKGLKESRA RKSDGGHWIK GLKESRARKS  120
SREMLYPTWD DRLDYCTEKE LIRLVASLDA KLEASTKRID SLSRKSSKSG ALDHHHMVNS  180
NLNSVPFREI NDLRRSSRNY IPSMQLKRSS NMQYPI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301593.11e-155PREDICTED: MADS-box transcription factor PHERES 1-like
STRINGXP_004301593.11e-154(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3484622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.17e-12AGAMOUS-like 82