PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00007258.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 400aa    MW: 43389.6 Da    PI: 6.6379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00007258.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-20180229255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  FANhyb_rscf00007258.1.g00001.1 180 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 229
                                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-22180238IPR016177DNA-binding domain
SMARTSM003807.3E-36180243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-32180238IPR001471AP2/ERF domain
PROSITE profilePS5103225.646180237IPR001471AP2/ERF domain
PfamPF008471.3E-13180229IPR001471AP2/ERF domain
PRINTSPR003671.4E-11181192IPR001471AP2/ERF domain
CDDcd000185.40E-15188239No hitNo description
PRINTSPR003671.4E-11203219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MCFLKVANQR RSSSGDGRPF QEQNDDVVPV DYEEEARRDQ LLMSNQLAVE EGRAQPHQTS  60
TVSPSMYLGY SRPAAEMSAM VSALTHVVSG QRHVVSGSSG GVASSFGQVY SAANANSPPL  120
ATLPESSTGA TTTTTVNEDD TKSVTTAAST VTATASTAVT VTPSASDTVS TEETGERRRR  180
YRGVRQRPWG KWAAEIRDPH KAARVWLGTF ETAEAAARAY DEAALRFRGN RAKLNFPENV  240
RLIPPQQPLQ SYAQSINSNS APARLAPNPS VRPLQPPPQP LQQQQPLYQS QSFQGSPDFL  300
RDYMDYSHLL QSSIDVHSQQ QSQPTNLLEQ MYYNSQLASL QSSLLQQPPP SSSTSSSTLP  360
SSTSSSASFP LFFSDHQQQL SFFGQQNQNP GGPSGFPAPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23179240163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290493.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A3Q8TDK20.0A0A3Q8TDK2_FRAAN; Transcription factor ERF91
STRINGXP_004290493.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.15e-22ERF family protein