PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00007282.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 93aa    MW: 10417.5 Da    PI: 8.9159
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00007282.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-091457344
                                    SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                    +WT+   +l+ +a + + ++   +W+ +a+ +g g++++++k ++
  FANhyb_rscf00007282.1.g00001.1 14 SWTPKQNKLFEKALAVYDKDtqdRWHNVAKAVG-GKSAEEVKRHY 57
                                    7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.609761IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-4960IPR009057Homeodomain-like
SMARTSM007174.8E-81163IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-131369IPR009057Homeodomain-like
PfamPF002491.8E-71457IPR001005SANT/Myb domain
CDDcd001671.98E-71557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASLTSSRNS NSSSWTPKQN KLFEKALAVY DKDTQDRWHN VAKAVGGKSA EEVKRHYEIL  60
VQDLMHIESG QVAIPNYRTT TGSSSRGNAD YEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-32483179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291870.11e-64PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1735e-36RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2P6R7T86e-48A0A2P6R7T8_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004291870.15e-64(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-37RAD-like 6