PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G000103_P01
Common NameLOC103652541
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 197aa    MW: 21241.9 Da    PI: 8.7864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G000103_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00136082123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+++F++   L rH  +H
  GRMZM2G000103_P01 60 HQCSLCHRTFPSGQALGRHKTSH 82
                       79*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.101.5E-410121No hitNo description
SuperFamilySSF576671.3E-55684No hitNo description
PfamPF139124.0E-116084IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2036082IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
PfamPF139121.1E-6110126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MALSKSLVNK AGQHHRHGYK CSVCDKVMTS HWKLSSPLAA TPRDKVLSGG TAHAKEEKLH  60
QCSLCHRTFP SGQALGRHKT SHWKPPSAVP RDEDEASFGD TAHTKEEKLH QCSLCHRTFP  120
SGQALGAWAG TSGCTTRRTR TRTPPGTKEA SVAAVATAVV RDFDLNLSAE ADGVPPDAKR  180
ACTDDSAAMM AVLRDFD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G000103
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G000103_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404737.12e-43zinc finger protein 36
TrEMBLA0A1D6NFW21e-142A0A1D6NFW2_MAIZE; Zinc finger protein AZF1
STRINGGRMZM2G000103_P011e-143(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.27e-14zinc-finger protein 2