PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G000686_P01

Common Name

umc1568

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

NF-YA

Protein Properties

Length: 237aa MW: 25843.6 Da PI: 9.0905

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G000686_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	107	1.6e-33	129	185	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl ksrkpylheSRh hA++R+Rg+gGrF GRMZM2G000686_P01 129 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTGGRF 185 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.1E-38	127	188	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	39.221	128	188	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.9E-29	130	185	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-24	131	153	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	133	153	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-24	162	185	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MIQFGHQMPD YDSPATQSTS ETSHQEASGM SEGSLNEHNN DHSGNLDGYS KSDENKMMSA 60 LSLGNPETAY AHNPKPDRTQ SFAISYPYAD PYYGGAVAAA YGPHAIMHPQ LVGMVPSSRV 120 PLPIEPAAEE PIYVNAKQYH AILRRRQLRA KLEAENKLVK SRKPYLHESR HLHAMKRARG 180 TGGRFLNTKQ QPESPGSGGS SDAQRVPATA SGGLFTKHEH SLPPGGRHHY HARGGGE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-23	129	197	2	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.85146	0.0	ear\| embryo\| endosperm\| meristem\| pollen\| shoot\| tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G000686

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G000686_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054250	0.0	BT054250.1 Zea mays full-length cDNA clone ZM_BFb0198B09 mRNA, complete cds.
GenBank	BT062100	0.0	BT062100.1 Zea mays full-length cDNA clone ZM_BFb0214I24 mRNA, complete cds.
GenBank	BT069779	0.0	BT069779.1 Zea mays full-length cDNA clone ZM_BFb0282K22 mRNA, complete cds.
GenBank	EU967250	0.0	EU967250.1 Zea mays clone 300715 nuclear transcription factor Y subunit A-3 mRNA, complete cds.
GenBank	KM655746	0.0	KM655746.1 Zea mays NF-YA1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008664541.1	1e-175	NF-YA1 isoform X2
Refseq	XP_020402196.1	1e-175	NF-YA1 isoform X2
TrEMBL	B6TQI5	1e-173	B6TQI5_MAIZE; NF-YA1
STRING	GRMZM2G000686_P04	1e-174	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	7e-42	nuclear factor Y, subunit A6

Link Out ? help Back to Top
Phytozome	GRMZM2G000686_P01
Entrez Gene	100194365

Publications ? help Back to Top
Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034] Luan M, et al. Family-wide survey of miR169s and NF-YAs and their expression profiles response to abiotic stress in maize roots. PLoS ONE, 2014. 9(3): p. e91369 [PMID:24633051]