PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G001139_P02
Common NameLOC100216936, MADS43, ZEAMMB73_488091
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22508.6 Da    PI: 8.0709
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G001139_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.77.2e-24958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs++gkly y 
  GRMZM2G001139_P02  9 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSTSGKLYHYL 58
                       79*********************************************996 PP
2K-box31.76.6e-1272169198
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                        y++++++++++   ++ + el+k ++  e +++e+R +  +d e+ ++  L+ Le+ Le +++k+Rs K++ +  +i++l +  +  +ee  
  GRMZM2G001139_P02  72 YEATTHTKVWTDIRQERRAELEKAEQMCELMEKELRVMTVDDGEQYTVPSLELLEHSLEAAVRKVRSEKDRKIGGEINYLENIIRGRHEERY 163
                        566778889***********************************************************************999999999998 PP

              K-box  93 aLrkkl 98 
                         L +kl
  GRMZM2G001139_P02 164 GLCNKL 169
                        888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.581161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-28291IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.9E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-233859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-1284169IPR002487Transcription factor, K-box
PROSITE profilePS512979.86985175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFST SGKLYHYLSP  60
TVPSVKDLVE RYEATTHTKV WTDIRQERRA ELEKAEQMCE LMEKELRVMT VDDGEQYTVP  120
SLELLEHSLE AAVRKVRSEK DRKIGGEINY LENIIRGRHE ERYGLCNKLA HSQASNNEGG  180
GGSTPPSSGL ELKLGLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-14184184MEF2 CHIMERA
6byy_B3e-14184184MEF2 CHIMERA
6byy_C3e-14184184MEF2 CHIMERA
6byy_D3e-14184184MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1033230.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G001139
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G001139_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0680040.0BT068004.1 Zea mays full-length cDNA clone ZM_BFb0028K02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001317248.11e-144uncharacterized protein LOC100216936
SwissprotQ8S1511e-111MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A3L6DQS71e-142A0A3L6DQS7_MAIZE; Uncharacterized protein
TrEMBLB6UCT11e-142B6UCT1_MAIZE; Floral homeotic protein APETALA 3
STRINGGRMZM2G001139_P011e-141(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.23e-18MIKC_MADS family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  3. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]