PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G001205_P01
Common NameLOC100284435
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 208aa    MW: 22124.2 Da    PI: 7.786
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G001205_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000575072123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+++F++   L  H  +H
  GRMZM2G001205_P01 50 FVCKTCNRVFPSFQALGGHRASH 72
                       89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.65E-848115No hitNo description
PfamPF139126.3E-134974IPR007087Zinc finger, C2H2
SMARTSM003550.115072IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4945077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM003555.193115IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-893117IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKRFAVQESE MARMLVLMSR SHGQDQALPL SACLAGGQRG EDRQAPERVF VCKTCNRVFP  60
SFQALGGHRA SHKKPRLDGD GAGDPSLAKP KLHGCSVCGL EFAIGQALGG HMRRHRAMTG  120
GVPAVPPATT RIVVDEKPDG DVVGIIRHDH GGVKQPGGGL WLDLNYPPCD DGRDAVEAEC  180
GRNAAAATGI TFHQFLDTAT MAVDCLGY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G001205
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G001205_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9683330.0EU968333.1 Zea mays clone 319090 ZFP16-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150802.21e-152ZFP16-1
RefseqXP_020394595.11e-152ZFP16-1 isoform X1
TrEMBLA0A1D6LHJ91e-143A0A1D6LHJ9_MAIZE; ZFP16-1
STRINGGRMZM2G001205_P011e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-28C2H2 family protein