PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G001223_P04
Common NameZm.65946
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 253aa    MW: 26433.3 Da    PI: 6.8806
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G001223_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-098332248
                       T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                       ++W++Ia +++ +Rt++++k++w+++l
  GRMZM2G001223_P04  8 RRWSSIATHLP-KRTDNEIKNYWNTHL 33
                       57*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.69137IPR017930Myb domain
CDDcd001671.13E-7733No hitNo description
SuperFamilySSF466893.28E-8841IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-13844IPR009057Homeodomain-like
PfamPF002491.4E-7833IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTCPRATRRW SSIATHLPKR TDNEIKNYWN THLKKRLAKM GIDPVTHKAR ADVVGGSSGA  60
GNNSGARYRA AAHLSHTAQW ESARLEAEAR LAREARLRAL SSPPPPPGPG PGPAFSGLES  120
PTSTLSFSES VLFASAAHDT HALTPRAYAE AFGAEQQQRF ADTAAAAADA APGFLAGVLL  180
GCSVAGAEKG FAASSTDASV CEQQQEEEDK GYWSSILNMV NSSMSSSSSS LTSDAVTDPA  240
AAYLPPATAA AEF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.659460.0cell lignification| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G001223
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G001223_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9690260.0EU969026.1 Zea mays clone 325641 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338724.11e-175uncharacterized protein LOC100279555
TrEMBLA0A1D6HBE41e-174A0A1D6HBE4_MAIZE; DNA binding protein
STRINGGRMZM2G001223_P031e-174(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-24myb domain protein 16