PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G001289_P02
Common NameHDZIV6_OCL6, LOC100279217
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 795aa    MW: 85322.2 Da    PI: 5.5496
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G001289_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.64.9e-19110166157
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        +++ +++t +q++e+e++F+++++p+ ++r+eL+++lgL   qVk+WFqN+R+++k+
  GRMZM2G001289_P02 110 KKRYHRHTLHQIQEMEAFFKECPHPDDKQRKELSRELGLVPLQVKFWFQNKRTQMKN 166
                        688899************************************************995 PP
2START191.63.8e-603055281206
                        HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
              START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla 77 
                        ela +a++elv++a+++ep+W   +       e +n++e+ + f+++++        +++ea+r+s vv+m++a lve+l+d++ q+ + + 
  GRMZM2G001289_P02 305 ELAVTAMEELVRMAQLDEPLWNAPAgghdgsaETLNEEEYARMFVPAGGlglkkqygFKSEASRDSSVVIMTHASLVEILMDVN-QYATVFS 395
                        57899******************99*********************999***********************************.8888888 PP

                        ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS
              START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158
                            +a+tlev+s+g      galq+m+ e+q++splvp Rd++fvRy++q  +g+w++vdvS+d       +ssv +++++pSg+li++++
  GRMZM2G001289_P02 396 sivsRAATLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRDSYFVRYCKQNADGTWAVVDVSLD-------TSSVLKCRRRPSGCLIQEMP 480
                        8888***********************************************************98.......568899************** PP

                        TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        ng+skvtwvehv++++r++  +++ lv sgla+ga++wv tl+rqce+
  GRMZM2G001289_P02 481 NGYSKVTWVEHVEVDDRSVNGIYKLLVDSGLAFGARRWVGTLDRQCER 528
                        **********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-2196151IPR009057Homeodomain-like
SuperFamilySSF466892.3E-1896167IPR009057Homeodomain-like
PROSITE profilePS5007116.439107167IPR001356Homeobox domain
SMARTSM003893.4E-19108171IPR001356Homeobox domain
PfamPF000461.3E-16110165IPR001356Homeobox domain
CDDcd000862.72E-18110168No hitNo description
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.608.9E-4152194IPR009057Homeodomain-like
PROSITE profilePS5084839.256296531IPR002913START domain
SuperFamilySSF559613.98E-35297530No hitNo description
CDDcd088757.29E-115300527No hitNo description
SMARTSM002343.8E-52305528IPR002913START domain
PfamPF018525.7E-50306528IPR002913START domain
Gene3DG3DSA:3.30.530.208.0E-7371521IPR023393START-like domain
SuperFamilySSF559619.62E-25549784No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MMIPARHMPP TMIVRNGGAA YGSSSALSLG QPNLMDNQQL QFQQALQQQH LLLDQIPATT  60
AESCDNTGRG GGGRGSDPLA DEFESKSGSE NVDGVSVDDQ DDPNQRPSKK KRYHRHTLHQ  120
IQEMEAFFKE CPHPDDKQRK ELSRELGLVP LQVKFWFQNK RTQMKNQHER QENSQLRAEN  180
EKLRAENMRY KEALSSASCP NCGGPAALGE MSFDEHHLRV ENARLREEID RISAIAAKYV  240
GKPMVSFPVL SSPLAGARPS PLDIDSGGVL GGAATYGGAA DIFGGGGGVA ACGAARDCDK  300
PMIVELAVTA MEELVRMAQL DEPLWNAPAG GHDGSAETLN EEEYARMFVP AGGLGLKKQY  360
GFKSEASRDS SVVIMTHASL VEILMDVNQY ATVFSSIVSR AATLEVLSTG VAGNYNGALQ  420
VMSVEFQVPS PLVPTRDSYF VRYCKQNADG TWAVVDVSLD TSSVLKCRRR PSGCLIQEMP  480
NGYSKVTWVE HVEVDDRSVN GIYKLLVDSG LAFGARRWVG TLDRQCERLA SVMASNIPTS  540
DIGVITSTEG RKSMLKLAER MVTSFCGGVT ASAAHQWTTL SGSGADDVRV MTRKSVDDPG  600
RPPGIVLNAA TSFWLPITPK RVFDFLRDES SRSEWDILSN GGVVQEMAHI ANGRDHGNCV  660
SLLRVNQSTN STQSNMLILQ ESCTDASGSY VIYAPVDVVA MNVVLNGGDP DYVALLPSGF  720
AILPDGPSGS SNMQGGGGGG VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIARTV  780
ERIKAAVSGE SVTQQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.45140.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G001289
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G001289_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538320.0BT053832.1 Zea mays full-length cDNA clone ZM_BFb0217B02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347891.10.0uncharacterized protein LOC100279217
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLG2J5S00.0G2J5S0_MAIZE; Homeodomain leucine zipper family IV protein
STRINGGRMZM2G001289_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Javelle M, et al.
    Genome-wide characterization of the HD-ZIP IV transcription factor family in maize: preferential expression in the epidermis.
    Plant Physiol., 2011. 157(2): p. 790-803
    [PMID:21825105]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]