PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G001663_P01

Common Name

Zm.124433

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

FAR1

Protein Properties

Length: 666aa MW: 73270 Da PI: 7.8011

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G001663_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.5	4.1e-27	67	157	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+s+ ++s+r++++++r+ vCskeg++e++ + e+++++ra tr+gCka++ +kk + gkw+vtk+ ++HnH GRMZM2G001663_P01 67 DFYSTYARSAGFRIRISRYTRSRRDNSVISRRIVCSKEGFHETRACDglhPEQKQQERAGTRVGCKAMILIKKFSPGKWVVTKFIKNHNHG 157 6*****************************************99999999************************************5 PP
2	FAR1	90.1	3e-28	205	297	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l GRMZM2G001663_P01 205 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRTKKvltdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSL 296 9********************************************99999999***********************************99 PP FAR1 90 a 90 + GRMZM2G001663_P01 297 S 297 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-24	67	157	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.4E-26	205	297	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MEGTVIRIAS ESKRGNEQTD SLTEVPRAIG TLVTHNREVE NLIVLEDDTE LTPYEGMEFE 60 SEDAARDFYS TYARSAGFRI RISRYTRSRR DNSVISRRIV CSKEGFHETR ACDGLHPEQK 120 QQERAGTRVG CKAMILIKKF SPGKWVVTKF IKNHNHGPVP PRKLDSRLVD QDCDPMEKPH 180 SIEVDPVEEP FEGMEFESEE AAKLFYVNYA RLNGFRARIS RYCRSRRDNS IISRQIVCSK 240 EGFREVRTKK VLTDEGKTKR PRMITRVGCK AMIVVKKMNS GKWMVSKFEK EHNHSLSYSK 300 MVPSTSNITS GEIVDLAAKG AHPSEVKNEG YSAGTQCNPA DSLTILYNNL CQEAIKFAKE 360 GSVTEEIYHV AVSALKEAAE KVAEVKRSRP TLSHCGFVRE SKHDVLQEKS MSALQCSNQV 420 ELTRTSPGSR PLQDSASNLL LIPTDILTDS RLYSGVDTAP LTGGFPTNES ESTHASESSF 480 MHFKNTKKTS SEKSQNTCFN QLIHGKEQGI HGSSKDTMVA IPAIPLALCM PVTQSLPGSS 540 TEGPYRLLAA PIEAVPISYC PAEPIRQTQK GICALGPFGG VLSELKNQGT VPKSIVHATA 600 LACGARAVPL EDAASLISAI ESKIRSGGAI IAKLPSNNLA PLVPPAIAMS SSSEDDEEHD 660 HSEPSQ

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MEGTVIRIAS ESKRGNEQTD SLTEVPRAIG TLVTHNREVE NLIVLEDDTE LTPYEGMEFE  60
SEDAARDFYS TYARSAGFRI RISRYTRSRR DNSVISRRIV CSKEGFHETR ACDGLHPEQK  120
QQERAGTRVG CKAMILIKKF SPGKWVVTKF IKNHNHGPVP PRKLDSRLVD QDCDPMEKPH  180
SIEVDPVEEP FEGMEFESEE AAKLFYVNYA RLNGFRARIS RYCRSRRDNS IISRQIVCSK  240
EGFREVRTKK VLTDEGKTKR PRMITRVGCK AMIVVKKMNS GKWMVSKFEK EHNHSLSYSK  300
MVPSTSNITS GEIVDLAAKG AHPSEVKNEG YSAGTQCNPA DSLTILYNNL CQEAIKFAKE  360
GSVTEEIYHV AVSALKEAAE KVAEVKRSRP TLSHCGFVRE SKHDVLQEKS MSALQCSNQV  420
ELTRTSPGSR PLQDSASNLL LIPTDILTDS RLYSGVDTAP LTGGFPTNES ESTHASESSF  480
MHFKNTKKTS SEKSQNTCFN QLIHGKEQGI HGSSKDTMVA IPAIPLALCM PVTQSLPGSS  540
TEGPYRLLAA PIEAVPISYC PAEPIRQTQK GICALGPFGG VLSELKNQGT VPKSIVHATA  600
LACGARAVPL EDAASLISAI ESKIRSGGAI IAKLPSNNLA PLVPPAIAMS SSSEDDEEHD  660
HSEPSQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.124433	0.0	meristem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G001663

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G001663_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954630	0.0	EU954630.1 Zea mays clone 1474335 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310343.1	0.0	uncharacterized protein LOC8078835
TrEMBL	A0A1D6JWI1	0.0	A0A1D6JWI1_MAIZE; Far-red impaired responsive (FAR1) family protein
STRING	GRMZM2G001663_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45
Representative plant	OGRP11840	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-29	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	GRMZM2G001663_P01