PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G001875_P01
Common NameLOC542611, Zm.13907
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 250aa    MW: 26428.8 Da    PI: 8.1132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G001875_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.1e-181462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEde l  +v+++G+g +W t +++ g++R++k+c++rw++yl
  GRMZM2G001875_P01 14 RGPWSPEEDEALRSYVQRHGSGgNWITMPKKAGLKRCGKSCRLRWLNYL 62
                       89*********************************************97 PP
2Myb_DNA-binding46.67.8e-1569111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T+eEd  +  + +qlG++ W++Ia+ m  gRt++++k++w++
  GRMZM2G001875_P01  69 GGFTAEEDAVIMSLYAQLGSK-WSLIASQME-GRTDNDVKNHWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.649962IPR017930Myb domain
SuperFamilySSF466891.45E-2812109IPR009057Homeodomain-like
SMARTSM007172.4E-121364IPR001005SANT/Myb domain
PfamPF002492.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-241569IPR009057Homeodomain-like
CDDcd001679.73E-101662No hitNo description
PROSITE profilePS5129422.90863117IPR017930Myb domain
SMARTSM007173.8E-1167115IPR001005SANT/Myb domain
PfamPF002491.8E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2370117IPR009057Homeodomain-like
CDDcd001671.12E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRTPCCDRA AVKRGPWSPE EDEALRSYVQ RHGSGGNWIT MPKKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FTAEEDAVIM SLYAQLGSKW SLIASQMEGR TDNDVKNHWN TKLKKRLLAA  120
AAASSAPPPA PAPAPLSSTT LTSSLFPSLA IPTVKTEAYT CDDFLAPALG LGDPFAAAAA  180
AADGSTSAAS AASSASNNWS AAENGAGEAS LFLLDFCAGP DLAGADQLHL PGGYYYPLDP  240
ILPSSPRRYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1396421e-131endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G001875
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G001875_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794160.0HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673589.10.0transcription factor RAX2
SwissprotQ9SJL78e-66RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A1D6MHQ10.0A0A1D6MHQ1_MAIZE; R2R3MYB-domain protein
TrEMBLA0A3L6FIE60.0A0A3L6FIE6_MAIZE; Transcription factor MYB36
STRINGGRMZM2G001875_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-63MYB family protein
Publications ? help Back to Top
  1. Rabinowicz PD,Braun EL,Wolfe AD,Bowen B,Grotewold E
    Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants.
    Genetics, 1999. 153(1): p. 427-44
    [PMID:10471724]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]