PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G002805_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 175aa    MW: 18394.4 Da    PI: 8.3946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G002805_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078115137123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cg  F     L  H+r+H
  GRMZM2G002805_P01 115 HECHVCGLGFEMGQALGGHMRRH 137
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-54878No hitNo description
PROSITE profilePS501579.9935279IPR007087Zinc finger, C2H2
PfamPF139128.4E-95276IPR007087Zinc finger, C2H2
SMARTSM003551.15274IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-5114141No hitNo description
PfamPF139121.3E-10115140IPR007087Zinc finger, C2H2
PROSITE profilePS501579.91115142IPR007087Zinc finger, C2H2
SMARTSM003550.58115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTHPRPDHEP AGEVSLALAL STDSSGGSAG APAAKRARRR GAAAATSGEG EFVCRTCSRA  60
FTSFQALGGH RTSHLRGRHG LELGVGARAL SRQQHKHHQQ AGDGGGGDRE PLAQHECHVC  120
GLGFEMGQAL GGHMRRHREE TTTGAADAWV WRADDALQRA RGGAADPPVL LELFA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.275411e-159endosperm| meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G002805
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G002805_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0422941e-157BT042294.1 Zea mays full-length cDNA clone ZM_BFb0193M11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644384.11e-121zinc finger protein ZAT5
TrEMBLA0A1D6GE741e-119A0A1D6GE74_MAIZE; ZFP16-2
STRINGGRMZM2G002805_P011e-120(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Representative plantOGRP1390044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-17C2H2 family protein