PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G002915_P02
Common NameLOC100384387
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31739.4 Da    PI: 6.1826
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G002915_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.28.7e-1688149256
                        T--SS--HHHHHHHHHHHH......H.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFe......k.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++++t+eq++eLe  Fe      + +r++  e++ eLA++lg+  rqV vWFqNrRa+++
  GRMZM2G002915_P02  88 TTKRRLTAEQVRELELSFEeekrklEpKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWR 149
                        67889**************88887745899999****************************9 PP
2HD-ZIP_I/II105.64e-3489186292
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.k......LeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                         krrl++eqv+ LE sFeee+ k      LeperK+elar+Lg+ prqvavWFqnrRAR+++kqlE+d+++L++a+d l + +++L +++++
  GRMZM2G002915_P02  89 TKRRLTAEQVRELELSFEEEKrKlepkrkLEPERKSELARRLGIAPRQVAVWFQNRRARWRSKQLEQDFDRLRAAHDDLIAGRDALLADNDR 180
                        59***************99865511111156678899******************************************************* PP

        HD-ZIP_I/II  87 Lreelk 92 
                        Lr+++ 
  GRMZM2G002915_P02 181 LRSQVI 186
                        **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-1575153IPR009057Homeodomain-like
PROSITE profilePS5007117.0784151IPR001356Homeobox domain
SMARTSM003892.4E-1486155IPR001356Homeobox domain
CDDcd000867.50E-1387152No hitNo description
PfamPF000465.1E-1387149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1791158IPR009057Homeodomain-like
PRINTSPR000312.8E-6122131IPR000047Helix-turn-helix motif
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PRINTSPR000312.8E-6131147IPR000047Helix-turn-helix motif
PfamPF021831.3E-13151193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
LRPPGGRPRS ALQEEVEERT YRHRQVFLFG GGFVGGAPPL VGGAADGRRK RPFQLTAHDE  60
LQLQLQLQLD DELCGLDYEL HGPQQERTTK RRLTAEQVRE LELSFEEEKR KLEPKRKLEP  120
ERKSELARRL GIAPRQVAVW FQNRRARWRS KQLEQDFDRL RAAHDDLIAG RDALLADNDR  180
LRSQVITLTE KLQTKESAAA AAEPGEQTVA AQATAYAVLE GDKLCSGSAA APAAAGTNDS  240
PESYFAGARS PPSSPEDDDR AFFFPPDALL NNWAWVWNDR QY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G002915
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G002915_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0700030.0BT070003.1 Zea mays full-length cDNA clone ZM_BFb0367A14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170401.10.0uncharacterized protein LOC100384387
RefseqXP_008668483.10.0putative homeobox DNA-binding and leucine zipper domain family protein isoform X1
SwissprotA3BYC12e-68HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLC0PNY40.0C0PNY4_MAIZE; HB transcription factor
STRINGGRMZM2G002915_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-29homeobox 1