PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G003304_P01
Common NameHB112, LOC100279599
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 270aa    MW: 29994.2 Da    PI: 4.749
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G003304_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.47e-2077130356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  GRMZM2G003304_P01  77 KKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 130
                        56789************************************************9 PP
2HD-ZIP_I/II130.85.2e-4276166191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        ekkrrl++eqv+lLE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+dy++Lk+ay+al+++++ L +++++Lr+++
  GRMZM2G003304_P01  76 EKKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDYDRLKAAYNALAADHQGLLADNDSLRAQV 166
                        69**************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1971135IPR009057Homeodomain-like
PROSITE profilePS5007118.20472132IPR001356Homeobox domain
SMARTSM003896.9E-1975136IPR001356Homeobox domain
CDDcd000867.82E-1877133No hitNo description
PfamPF000463.8E-1777130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-2178139IPR009057Homeodomain-like
PRINTSPR000314.3E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000314.3E-6112128IPR000047Helix-turn-helix motif
PfamPF021837.1E-16132174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MHPSAVSFDS GDGRRRGGAQ MLLFGGGGSA NSNGFFRGVP MAVLAMDDAT RVGKRPFFTT  60
HEELLEEEYY DEQAPEKKRR LTAEQVQLLE RSFEEENKLE PERKTELARR LGMAPRQVAV  120
WFQNRRARWK TKQLETDYDR LKAAYNALAA DHQGLLADND SLRAQVICLT EKLQGKETSL  180
SATIAAQEVD QPNEHTTGTE KLLAQQLKDD LHSSCGCTGH GALSSEEEDG GVVSDEGCNF  240
DLPDAMFAVG VTNHGAEEAQ LANWTSWFWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1180730.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G003304
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G003304_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545410.0BT054541.1 Zea mays full-length cDNA clone ZM_BFc0148O10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146068.10.0uncharacterized LOC100279599
SwissprotQ6ZA741e-108HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
TrEMBLB7ZYZ90.0B7ZYZ9_MAIZE; HB transcription factor
STRINGGRMZM2G003304_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-53homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]