PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G003489_P03
Common NameZm.41316
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 117aa    MW: 12899.5 Da    PI: 4.1824
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G003489_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind77.13e-2453111260
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                        Fl+k+y++++d+++++++sw   g+sfvv+d + fa  +Lp+yFkhsnf+SFvRQLn+Y
  GRMZM2G003489_P03  53 FLTKTYDVVDDPNTDTIVSWGFAGTSFVVWDANAFALVILPRYFKHSNFSSFVRQLNTY 111
                        9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-2547111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-1849117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.94E-2249112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.2E-2053111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-145376IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1491103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-14104116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MDPFHGIVKE EFDLDFDFTC ASAAAAAAAS WAVALPEMPR PMEGLGEVGP TPFLTKTYDV  60
VDDPNTDTIV SWGFAGTSFV VWDANAFALV ILPRYFKHSN FSSFVRQLNT YVRVQEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-18441171798Heat shock factor protein 1
5d5v_B4e-18441171798Heat shock factor protein 1
5d5v_D4e-18441171798Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.413160.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G003489
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G003489_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0858160.0BT085816.2 Zea mays full-length cDNA clone ZM_BFc0067H20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335364.13e-76uncharacterized protein LOC109621226
RefseqXP_020395790.13e-76uncharacterized protein LOC109621226 isoform X1
SwissprotQ84MN78e-49HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A1D6L3W57e-75A0A1D6L3W5_MAIZE; Heat stress transcription factor A-6b
TrEMBLA0A317YJD57e-75A0A317YJD5_MAIZE; Heat stress transcription factor A-2a
STRINGSi036148m3e-55(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-35heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]