PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G003927_P01
Common NameLOC100276104, Ra1, ramosa1, Zm.124956
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 175aa    MW: 18767.9 Da    PI: 7.1626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G003927_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.3e-064668123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C++C+k F++   L  H++ H
  GRMZM2G003927_P01 46 YTCGYCKKEFRSAQGLGGHMNIH 68
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-64472No hitNo description
PROSITE profilePS5015710.8034673IPR007087Zinc finger, C2H2
PfamPF139129.0E-64668IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEGEDDGAQM KLQQQQQSPC SDNLSLSAAS SWLPPQVRSS SSSSSYTCGY CKKEFRSAQG  60
LGGHMNIHRL DRARLIHQQY TSHRIAAPHP NPNPSCTSVL DLELSLSSLL AHGAASSDGG  120
LSVPVAKLAG NRFSSASLPT TKDVEGKNLE LRIGACSHGD GAEERLDLQL RLGYY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1249560.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G003927
Function -- GeneRIF ? help Back to Top
  1. Genome-wide occupancy of RA1 showes that it differently regulates modules of target genes based on spatiotemporal context.
    [PMID: 24307553]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G003927_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0131870.0DQ013187.1 Zea mays cultivar KUI2007 ramosa 1 (Ra1) gene, complete cds.
GenBankDQ0131880.0DQ013188.1 Zea mays cultivar TX601 ramosa 1 (Ra1) gene, complete cds.
GenBankDQ0131890.0DQ013189.1 Zea mays cultivar Ki21 ramosa 1 (Ra1) gene, complete cds.
GenBankDQ0131900.0DQ013190.1 Zea mays cultivar CML258 ramosa 1 (Ra1) gene, complete cds.
GenBankDQ0131910.0DQ013191.1 Zea mays cultivar CML254 ramosa 1 (Ra1) gene, complete cds.
GenBankEU9600550.0EU960055.1 Zea mays clone 221477 hypothetical protein mRNA, complete cds.
GenBankGQ8919130.0GQ891913.1 Zea mays subsp. mexicana clone teo21_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919190.0GQ891919.1 Zea mays subsp. parviglumis clone teo27_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919250.0GQ891925.1 Zea mays subsp. mays clone LR29_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919280.0GQ891928.1 Zea mays subsp. mays clone LR12_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919300.0GQ891930.1 Zea mays subsp. mays clone LR52_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919320.0GQ891932.1 Zea mays subsp. mays clone LR57_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919330.0GQ891933.1 Zea mays subsp. mays clone LR57_2 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919340.0GQ891934.1 Zea mays subsp. mays clone LR2_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919350.0GQ891935.1 Zea mays subsp. mays clone LR30_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919370.0GQ891937.1 Zea mays subsp. mays clone LR39_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919380.0GQ891938.1 Zea mays subsp. mays clone LR34_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919390.0GQ891939.1 Zea mays subsp. mays clone LR40_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919410.0GQ891941.1 Zea mays subsp. mays clone LR35_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
GenBankGQ8919440.0GQ891944.1 Zea mays subsp. mays clone LR22_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143449.11e-126ramosa 1
TrEMBLA0A3L6E4L61e-125A0A3L6E4L6_MAIZE; Transcriptional regulator SUPERMAN
TrEMBLD0UTZ41e-125D0UTZ4_ZEAMP; Ramosa1 C2H2 zinc-finger transcription factor
TrEMBLD0UU071e-125D0UU07_ZEAMM; Ramosa1 C2H2 zinc-finger transcription factor
TrEMBLD0UU191e-125D0UU19_MAIZE; Ramosa1 C2H2 zinc-finger transcription factor
TrEMBLQ4U4A81e-125Q4U4A8_MAIZE; Ramosa 1
STRINGGRMZM2G003927_P011e-125(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2224367
Representative plantOGRP1958622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-13C2H2 family protein
Publications ? help Back to Top
  1. Vollbrecht E,Springer PS,Goh L,Buckler ES,Martienssen R
    Architecture of floral branch systems in maize and related grasses.
    Nature, 2005. 436(7054): p. 1119-26
    [PMID:16041362]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Eveland AL, et al.
    Regulatory modules controlling maize inflorescence architecture.
    Genome Res., 2014. 24(3): p. 431-43
    [PMID:24307553]