PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G004619_P01
Common NameZm.95590
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 273aa    MW: 28637.8 Da    PI: 4.8119
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G004619_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.45.2e-23183226144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r  + +e
  GRMZM2G004619_P01 183 EPEPGRCRRTDGKKWRCWRNTIPNEKYCERHMHRGRKRPVQVVE 226
                        69************************************988776 PP
2QLQ53.29.1e-19117152237
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        aFTa+Qlq+L++Q  +y+y+aa++PvP +L+++++k
  GRMZM2G004619_P01 117 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPVWK 152
                        8*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-7116152IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.524117152IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-11117151IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.169183227IPR014977WRC domain
PfamPF088791.9E-19184223IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAAEGEAKNP SGGGEGGNPQ HQQAVQAAPA EPPTAQGEAV QEAGAQATGQ EPEGEKANRD  60
GEGSAGEKDD GACRDLVLVE DPEVLAVEDP EEAAATAALQ EEMKALVASV PDGAGAAFTA  120
MQLQELEQQS RVYQYMAARV PVPTHLVFPV WKSVTGASSE GAQKYPTLLG LATLCLDFGK  180
NPEPEPGRCR RTDGKKWRCW RNTIPNEKYC ERHMHRGRKR PVQVVEEAEP DSASGSKSAP  240
SKATEGAKKV DDKSPGSKKL AVAAAAAAAV QST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.955900.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G004619
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in shoots (Ref.1, PubMed:24854713). Expressed in developing leaves (Ref.1, PubMed:24854713). {ECO:0000269|PubMed:24854713, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G004619_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0385840.0BT038584.1 Zea mays full-length cDNA clone ZM_BFb0295C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106023.20.0uncharacterized protein LOC100101537
SwissprotA5HEG91e-155GRF10_MAIZE; GRF-interacting factor 10
TrEMBLB4FN960.0B4FN96_MAIZE; Growth-regulating factor 9
TrEMBLK4JCD80.0K4JCD8_MAIZE; GRF-type transcription factor (Fragment)
STRINGGRMZM2G004619_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Representative plantOGRP1193646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-30growth-regulating factor 5
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]