PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G004663_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Nin-like
Protein Properties Length: 362aa    MW: 38770.4 Da    PI: 4.9857
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G004663_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK65.77.1e-21278327352
             RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        ++++l+d+++yF+lp+ +AAkeL +c+TvLK + R++ I+RWP+Rkiks+
  GRMZM2G004663_P01 278 SNLQLDDIARYFHLPMVEAAKELCICATVLKGTSRKFHIRRWPYRKIKSI 327
                        799*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.005267347IPR003035RWP-RK domain
PfamPF020422.9E-19279327IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAEDGADDGQ GIYDPFLVPN DDFDDDVLYL LDMNDGGGMD PRPLQGAATQ SAIVVAGPSG  60
DDNNNLLEWP PTSTLDSVVV DNSAPTHNAV LASDPTTTAT SGVQDDAGAA GLQATKLGIH  120
GVAAGVFHHA TLELYRIDSN GLAATMTTQL THQSYVDFSG RDYVWVKHYL TDYARQRAAG  180
GYMVLDDSIS AFQDALCTSM VCAGHAREAV ALEINGGRPA GDDGGGVVRA PAAMVEESSV  240
PAVAGPSKAV DNKEQGRRRP EIRPAAKTVL AVQRERASNL QLDDIARYFH LPMVEAAKEL  300
CICATVLKGT SRKFHIRRWP YRKIKSIDSQ IAKLTRGNGG PAAMAEIERL TDYRRRIYAG  360
LE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256263RRRPEIRP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G004663
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G004663_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321666.11e-155uncharacterized protein LOC8084238
TrEMBLA0A1D6MUN91e-170A0A1D6MUN9_MAIZE; RWP-RK domain protein
STRINGGRMZM2G004663_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-11RWP-RK domain-containing protein