PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G005112_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 202aa    MW: 22493.4 Da    PI: 5.5217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G005112_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-0966105647
                        HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +eEd ++  a+  +G++ W+ Ia+ +   Rt++ +k++w++ 
  GRMZM2G005112_P01  66 QEEDCIIMIAHVVHGNK-WACIAKLLD-MRTDNAIKNHWNST 105
                        6899999999*******.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.89156110IPR017930Myb domain
SMARTSM007170.003360108IPR001005SANT/Myb domain
SuperFamilySSF466892.04E-1166111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-1466107IPR009057Homeodomain-like
CDDcd001671.03E-566106No hitNo description
PfamPF002495.7E-766105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAEEEQTQTE ALRQPQPYHL SAPPSGEDDD EATAFGAPVG GGAVAFAFTT ATTTNTTMEE  60
RALVAQEEDC IIMIAHVVHG NKWACIAKLL DMRTDNAIKN HWNSTLRRRY YNDGRCKHGG  120
SMERSIPKVS RAVSEAVLEE PWHLKDLSSF TAMDVRDAPV QIVPETFARA CHNIDQFLLL  180
KVLIHPTCPD QLQRLVLSDH TV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G005112
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G005112_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458769.11e-64transcription factor MYB1
TrEMBLA0A1D6N7301e-150A0A1D6N730_MAIZE; Uncharacterized protein
STRINGGRMZM2G005112_P011e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-19myb domain protein 109