PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G005155_P03
Common NameLOC100272346
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29155.3 Da    PI: 8.6592
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G005155_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.7e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvtfskRr g++KKA+EL +LCda++ viifs +g++yeyss
  GRMZM2G005155_P03  9 KKIENPTNRQVTFSKRRMGLFKKANELAILCDAQIGVIIFSGSGRMYEYSS 59
                       68***********************************************96 PP
2K-box454.7e-16851581487
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                        +++  qe++++k+e + L+    +++ edL s s ++L +Leqq+e sl k+R +K+ell +q+ e  ++e  +
  GRMZM2G005155_P03  85 QQKIVQEMTRMKDERNRLRMIMAQYMAEDLASFSAQDLSNLEQQIEFSLYKVRLRKQELLDQQLLEIHQREMHM 158
                        68999**************************************************************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.357161IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-30279IPR002100Transcription factor, MADS-box
CDDcd002651.38E-39276No hitNo description
PRINTSPR004041.4E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.8E-1481161IPR002487Transcription factor, K-box
PROSITE profilePS5129710.81185186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGKVELKK IENPTNRQVT FSKRRMGLFK KANELAILCD AQIGVIIFSG SGRMYEYSSP  60
PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMKDERN RLRMIMAQYM AEDLASFSAQ  120
DLSNLEQQIE FSLYKVRLRK QELLDQQLLE IHQREMHMPA EQGGYLCLMN PAAAIASGQH  180
QQAGEMVGIN PRPFPWWDVG ASGSGSGSQS QQQLLHGRDA AESSMTALGL SPQLHGYRLQ  240
PRQPNLQQDA DIHGWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-17160160MEF2 CHIMERA
6byy_B9e-17160160MEF2 CHIMERA
6byy_C9e-17160160MEF2 CHIMERA
6byy_D9e-17160160MEF2 CHIMERA
6bz1_A9e-17160160MEF2 CHIMERA
6bz1_B9e-17160160MEF2 CHIMERA
6bz1_C9e-17160160MEF2 CHIMERA
6bz1_D9e-17160160MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.120010.0meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G005155
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G005155_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0385320.0BT038532.1 Zea mays full-length cDNA clone ZM_BFb0284C04 mRNA, complete cds.
GenBankBT0691330.0BT069133.1 Zea mays full-length cDNA clone ZM_BFb0202H05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140301.10.0uncharacterized protein LOC100272346
RefseqXP_008667414.10.0MADS transcription factor isoform X1
SwissprotQ84NC29e-90MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLB4FN440.0B4FN44_MAIZE; MADS transcription factor
STRINGGRMZM2G005155_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]