PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006282_P01
Common NameLOC103628259
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 174aa    MW: 18660.9 Da    PI: 7.774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006282_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000122951123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  GRMZM2G006282_P01 29 YPCSFCRREFRSAQALGGHMNVH 51
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.1E-62656No hitNo description
PfamPF139125.6E-62952IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0742956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDERESRKKQ QLSSWMSSCG FTAWPPRSYP CSFCRREFRS AQALGGHMNV HRRDRARLTH  60
GSPPPPPPPP PPSRAPPAMI PNLNYPPPSS SSSTNKKLLD APSSIEMELE LELGVGVACS  120
SDCNTAGAAT CCTTTSTTPA AAGGGPEDDR ALDLELRLGS VSSPSFHHTR AYDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-132451229superman protein
2l1o_A4e-132451229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006282
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006282_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646713.11e-124transcriptional regulator SUPERMAN
TrEMBLA0A1D6GXQ31e-123A0A1D6GXQ3_MAIZE; Transcriptional regulator SUPERMAN
STRINGGRMZM2G006282_P011e-123(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-19C2H2 family protein