PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006493_P02
Common NameLOC100272717, ZEAMMB73_692678
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 544aa    MW: 58779.7 Da    PI: 7.099
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006493_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-10107132126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C++++++GtC++G +CkF+H+
  GRMZM2G006493_P02 107 PGEPDCSYYLKFGTCRFGMKCKFNHP 132
                        5789*********************8 PP
2zf-CCCH25.22.9e-08255277325
                        S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                        +e+C++++  G Ck+G +Ck+ H
  GRMZM2G006493_P02 255 QEECKYYSTPGGCKFGKTCKYLH 277
                        589******************** PP
3zf-CCCH33.28.6e-11302326226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++++C++++rtG Ck+  +CkF+H+
  GRMZM2G006493_P02 302 GEKECPYYMRTGSCKFATNCKFHHP 326
                        7899********************9 PP
4zf-CCCH20.39.7e-07448474127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++f ++G+Cky  +C+++H++
  GRMZM2G006493_P02 448 PGQPECQHFVKSGFCKYRMKCRYHHPR 474
                        5789*********************96 PP
5zf-CCCH24.74e-08495520227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C ++ r+G+CkyG+ C F+H++
  GRMZM2G006493_P02 495 DQPVCTYYGRYGFCKYGPACMFNHPF 520
                        6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-4106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746106134IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7108132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-5111134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313252280IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4253279IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-6255277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-5256280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4258279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793300328IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5300327IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7302326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4306325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77447475IPR000571Zinc finger, CCCH-type
SMARTSM003560.018447474IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5451476IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483493521IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-4493520IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5494521IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5495520IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MADADAKSQP PDAAASPDAS ISSPSSLGGG GGDAADADAI EKQLAGLGIA VAGGFPEPSG  60
WDDGPVPVPI PADVLVGGDE GAGEKPRAPA PAPTGAVDVK VRFPRRPGEP DCSYYLKFGT  120
CRFGMKCKFN HPARKKKTSR VRGVGSNGSG SNSSSNKASS PDDDQAPKEE YEGLVPDISD  180
SMGFDDKGSL SSSENHRNMS YEVIDMKRGK LEPKEKVCEE PEKAIHFTKL DETNIATQKG  240
SKDKRKETFA EGNTQEECKY YSTPGGCKFG KTCKYLHREG NGGKTEVEKA ELNFLGLPLR  300
PGEKECPYYM RTGSCKFATN CKFHHPDPTN ASSKEPGLEH ENGDVPLQNV QGSSQPSLQM  360
WPDQRALNEQ HVPFLAPAPS YSGGMVPPQG MYPSSDWSGY HQVPLNPYYP PGVPFPHFPA  420
AHMNHPMYKA ADIPGHQPPP SDEYPERPGQ PECQHFVKSG FCKYRMKCRY HHPRSRQSAP  480
PPAGLSPIGL PIKPDQPVCT YYGRYGFCKY GPACMFNHPF NFGPPVPAAG PPLPGQYPTH  540
GNFA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006493
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006493_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0392340.0BT039234.1 Zea mays full-length cDNA clone ZM_BFc0001O03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140642.10.0uncharacterized protein LOC100272717 isoform 1
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLB4FQ460.0B4FQ46_MAIZE; Uncharacterized protein
TrEMBLK0DCN10.0K0DCN1_MAIZE; C3H54 transcription factor (Fragment)
STRINGGRMZM2G006493_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Representative plantOGRP1476044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-59C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]