PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006493_P04
Common NameLOC100272717, ZEAMMB73_692678
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 230aa    MW: 23880.6 Da    PI: 4.9238
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006493_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.4e-11107132126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C++++++GtC++G +CkF+H+
  GRMZM2G006493_P04 107 PGEPDCSYYLKFGTCRFGMKCKFNHP 132
                        5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.746106134IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4106133IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-8108132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5111134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MADADAKSQP PDAAASPDAS ISSPSSLGGG GGDAADADAI EKQLAGLGIA VAGGFPEPSG  60
WDDGPVPVPI PADVLVGGDE GAGEKPRAPA PAPTGAVDVK VRFPRRPGEP DCSYYLKFGT  120
CRFGMKCKFN HPARKKKTSR VRGVGSNGSG SNSSSNKASS PDDDQAPKEE YEGLVPDISD  180
SMGFDDKGSL SSSENHRNMS YEVSIFFYVI MIRFLISVSR SLPALLHCTC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.771180.0ear| embryo| endosperm| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006493
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006493_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683000.0BT068300.1 Zea mays full-length cDNA clone ZM_BFb0104M16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661562.11e-138uncharacterized LOC100272717 isoform X2
SwissprotQ2QTY23e-42C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A1D6IUH61e-149A0A1D6IUH6_MAIZE; Zinc finger CCCH domain-containing protein 67
STRINGGRMZM2G006493_P021e-137(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.23e-12C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]