PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006493_P05
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 287aa    MW: 31702.9 Da    PI: 8.0435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006493_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-071171026
                       GGTS--TTTTT-SS-SS CS
            zf-CCCH 10 artGtCkyGdrCkFaHg 26
                       +rtG Ck+  +CkF+H+
  GRMZM2G006493_P05  1 MRTGSCKFATNCKFHHP 17
                       8***************9 PP
2zf-CCCH21.44.4e-07139165127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++f ++G+Cky  +C+++H++
  GRMZM2G006493_P05 139 PGQPECQHFVKSGFCKYRMKCRYHHPR 165
                        5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035680118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.634119IPR000571Zinc finger, CCCH-type
SMARTSM003560.018138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77138166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5142167IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRTGSCKFAT NCKFHHPDPT NASSKEPGLE HENGDVPLQN VQGSSQPSLQ MWPDQRALNE  60
QHVPFLAPAP SYSGGMVPPQ GMYPSSDWSG YHQVPLNPYY PPGVPFPHFP AAHMNHPMYK  120
AADIPGHQPP PSDEYPERPG QPECQHFVKS GFCKYRMKCR YHHPRSRQSA PPPAGLSPIG  180
LPIKPVSSYP IVLHSRLRPG EPFQKYDSGQ VYCIFALLFC CRINLCALTM DAMASASMGQ  240
PACSTTPSTS GLPCRQQDHP SLGSTLRMET SPSRHVTSDF LSRHDCL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.771180.0ear| embryo| endosperm| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006493
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006493_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683000.0BT068300.1 Zea mays full-length cDNA clone ZM_BFb0104M16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661561.10.0uncharacterized LOC100272717 isoform X1
RefseqXP_008661562.10.0uncharacterized LOC100272717 isoform X2
RefseqXP_008661564.10.0uncharacterized LOC100272717 isoform X4
SwissprotQ2QTY21e-98C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLC0PJ310.0C0PJ31_MAIZE; Uncharacterized protein
STRINGGRMZM2G006493_P021e-131(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-22C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]