PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006493_P06
Common NameLOC100272717, ZEAMMB73_692678
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 235aa    MW: 25969.3 Da    PI: 8.2215
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006493_P06genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-071171026
                       GGTS--TTTTT-SS-SS CS
            zf-CCCH 10 artGtCkyGdrCkFaHg 26
                       +rtG Ck+  +CkF+H+
  GRMZM2G006493_P06  1 MRTGSCKFATNCKFHHP 17
                       8***************9 PP
2zf-CCCH21.83.3e-07139165127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++f ++G+Cky  +C+++H++
  GRMZM2G006493_P06 139 PGQPECQHFVKSGFCKYRMKCRYHHPR 165
                        5789*********************96 PP
3zf-CCCH26.21.4e-08186211227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C ++ r+G+CkyG+ C F+H++
  GRMZM2G006493_P06 186 DQPVCTYYGRYGFCKYGPACMFNHPF 211
                        6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035680118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.634119IPR000571Zinc finger, CCCH-type
SMARTSM003560.018138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77138166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5142167IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-4184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483184212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6185212IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6186211IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRTGSCKFAT NCKFHHPDPT NASSKEPGLE HENGDVPLQN VQGSSQPSLQ MWPDQRALNE  60
QHVPFLAPAP SYSGGMVPPQ GMYPSSDWSG YHQVPLNPYY PPGVPFPHFP AAHMNHPMYK  120
AADIPGHQPP PSDEYPERPG QPECQHFVKS GFCKYRMKCR YHHPRSRQSA PPPAGLSPIG  180
LPIKPDQPVC TYYGRYGFCK YGPACMFNHP FNFGPPVPAA GPPLPGQYPT HGNFA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006493
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006493_P06
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0392340.0BT039234.1 Zea mays full-length cDNA clone ZM_BFc0001O03 mRNA, complete cds.
GenBankBT0683920.0BT068392.1 Zea mays full-length cDNA clone ZM_BFb0150F03 mRNA, complete cds.
GenBankBT0700610.0BT070061.1 Zea mays full-length cDNA clone ZM_BFb0370P20 mRNA, complete cds.
GenBankEU9698660.0EU969866.1 Zea mays clone 336566 zinc finger CCCH type domain-containing protein ZFN-like 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140642.11e-172uncharacterized protein LOC100272717 isoform 1
RefseqXP_008661567.11e-172uncharacterized LOC100272717 isoform X7
SwissprotQ2QTY21e-127C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLB4FQ461e-171B4FQ46_MAIZE; Uncharacterized protein
TrEMBLK0DCN11e-171K0DCN1_MAIZE; C3H54 transcription factor (Fragment)
STRINGGRMZM2G006493_P021e-171(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-38C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]