PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006497_P01
Common NameLOC107457600, ZEAMMB73_831999, Zm.140410
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 341aa    MW: 36589.8 Da    PI: 7.3581
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006497_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-28150207359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YYrC++  +C+++k+ver+++dp+++++ Y+geH h+
  GRMZM2G006497_P01 150 DPWAWRKYGQKPIKGSPYPRGYYRCSTDkDCRARKQVERCRTDPSTLIVGYTGEHSHP 207
                        89***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28142209IPR003657WRKY domain
PROSITE profilePS5081130.63143209IPR003657WRKY domain
SuperFamilySSF1182901.44E-25144209IPR003657WRKY domain
SMARTSM007742.7E-32148208IPR003657WRKY domain
PfamPF031067.9E-24150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEAADLRWCC GSSSNDWDLH AVVRFASCSG GGSRVTTSSP LRASDEPFSS CLLPPPQSQT  60
KDEVTDAAAP QQLPTGPAVG VDDLCLQQAF LGLATPQPRN NEAPPPAKRP RTPYRSNNGV  120
GGPTRSKRKK KKSQTSKKEV ARVPVGASPD PWAWRKYGQK PIKGSPYPRG YYRCSTDKDC  180
RARKQVERCR TDPSTLIVGY TGEHSHPVPL HRNALAGTTR NKPQPAPPST SSPAEQPDPA  240
ASPIDDTTTP LLCPSVLGVE CEEEEENTVA AGLLLEDAEM EGYEDVLLFL KPAPSPSNGS  300
GSKDVMLFPD PHRPAPGADN TGGSEKVVPL SNLQSTSYHF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-18133209179Disease resistance protein RRS1
5w3x_D2e-18133209179Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006497
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006497_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686090.0BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308567.10.0uncharacterized protein LOC107457600
TrEMBLK7UYE90.0K7UYE9_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G006497_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-38WRKY family protein