PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G007063_P04

Common Name

Zm.16373

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bZIP

Protein Properties

Length: 367aa MW: 38746 Da PI: 5.2707

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G007063_P04	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.9	2.2e-13	176	227	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + +rrkq+NRe+ArrsR RK a + eLe v++L eN++L +l +++ GRMZM2G007063_P04 176 RQQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 227 679**************************************98887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.4E-15	172	236	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.461	174	229	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.5E-10	175	228	No hit	No description
SuperFamily	SSF57959	9.14E-10	176	226	No hit	No description
Pfam	PF00170	3.3E-10	176	225	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	2.7E-49	243	360	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MNRCPSEWYF QKFLEEAVLD SPGPVAGVGR SSGQAGVEAA ESKPLGAAAP ASVSSSVVDP 60 VEYNAMLKQK LEKDLAAIAM WRASGAAPPD LSATAASLPS VGAPHAAPLK PVGGTESLVQ 120 NMLAGAPVGG SGPHVVQIAD IPVKQTTSSS SREQSDDDDM EGDAETNGNG NPVQQRQQRR 180 KQSNRESARR SRSRKAAHLN ELEAQVAQLR VENSSLLRRL ADVNQKFNEA AVDNRVLKAD 240 VETLRAKVKM AEDSVKRVTG MNALYPAVSD MSSLSMPFNG SPSDSASDST VPVQDDLNSY 300 FANPSEIGCN NGYMPDIASS VQQDDNFVNG YQAAGKMGRT DSLQRVASLE HLQKRMCGGP 360 ASSGSTS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MNRCPSEWYF QKFLEEAVLD SPGPVAGVGR SSGQAGVEAA ESKPLGAAAP ASVSSSVVDP  60
VEYNAMLKQK LEKDLAAIAM WRASGAAPPD LSATAASLPS VGAPHAAPLK PVGGTESLVQ  120
NMLAGAPVGG SGPHVVQIAD IPVKQTTSSS SREQSDDDDM EGDAETNGNG NPVQQRQQRR  180
KQSNRESARR SRSRKAAHLN ELEAQVAQLR VENSSLLRRL ADVNQKFNEA AVDNRVLKAD  240
VETLRAKVKM AEDSVKRVTG MNALYPAVSD MSSLSMPFNG SPSDSASDST VPVQDDLNSY  300
FANPSEIGCN NGYMPDIASS VQQDDNFVNG YQAAGKMGRT DSLQRVASLE HLQKRMCGGP  360
ASSGSTS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.16373	0.0	meristem\| ovary\| pericarp\| pollen\| tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G007063

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 30 days after flowering (DAF). {ECO:0000269\|PubMed:11133985}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G007063_P04

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040596	0.0	BT040596.1 Zea mays full-length cDNA clone ZM_BFc0102P10 mRNA, complete cds.
GenBank	BT067773	0.0	BT067773.1 Zea mays full-length cDNA clone ZM_BFc0156G06 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105315.1	0.0	opaque2 heterodimerizing protein 2
Swissprot	Q7X9A8	1e-164	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	B4FU08	0.0	B4FU08_MAIZE; Uncharacterized protein
STRING	GRMZM2G007063_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	5e-41	bZIP family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G007063_P04

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]