PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G008647_P02
Common NameZm.162525
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 186aa    MW: 20436.2 Da    PI: 6.7629
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G008647_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.3e-081546132
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                       +g W+ eEd++l d++ ++G g+W++ + + g
  GRMZM2G008647_P02 15 KGLWSLEEDQKLRDYILLHGHGCWSALPMKAG 46
                       678**********************9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.261041IPR017877Myb-like domain
SuperFamilySSF466898.58E-71044IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-91446IPR009057Homeodomain-like
PfamPF002491.7E-51546IPR001005SANT/Myb domain
CDDcd001671.44E-41847No hitNo description
PROSITE profilePS5135215.30840158IPR013766Thioredoxin domain
Gene3DG3DSA:3.40.30.103.5E-3652167IPR012336Thioredoxin-like fold
SuperFamilySSF528339.19E-3655159IPR012336Thioredoxin-like fold
CDDcd029982.71E-5557153No hitNo description
PfamPF000853.8E-2958155IPR013766Thioredoxin domain
TIGRFAMsTIGR011263.2E-3668156IPR005788Disulphide isomerase
PRINTSPR004217.5E-87078No hitNo description
PRINTSPR004217.5E-87887No hitNo description
PRINTSPR004217.5E-8120131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045454Biological Processcell redox homeostasis
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0016853Molecular Functionisomerase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGVKGGDKPK PNYRKGLWSL EEDQKLRDYI LLHGHGCWSA LPMKAGTNVK IAAIPSSVVV  60
LTSETFDSIV LDEFYAPWCG HCKHLAPIYE KLASVFKQDD SVVIANLDAD KHTDLAKKYG  120
VSSFPTLKFF PKGNKAGEDY DGGRDLDDFV KFINEKCGTS RDPKGHLTSE ACAKLESSCE  180
GVSQCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mek_A3e-23581609119PROTEIN DISULFIDE ISOMERASE
3idv_A4e-235516815239Protein disulfide-isomerase A4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1625250.0meristem| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G008647
Functional Description ? help Back to Top
Source Description
UniProtActs as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G008647_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350550.0BT035055.1 Zea mays full-length cDNA clone ZM_BFb0035A08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353901.11e-121uncharacterized protein LOC100192937
RefseqXP_020408635.11e-121uncharacterized protein LOC100192937 isoform X1
SwissprotQ75M082e-76PDI21_ORYSJ; Protein disulfide isomerase-like 2-1
TrEMBLB4FD671e-132B4FD67_MAIZE; Uncharacterized protein
STRINGGRMZM2G008647_P021e-136(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.15e-13myb domain protein 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Houston NL, et al.
    Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins.
    Plant Physiol., 2005. 137(2): p. 762-78
    [PMID:15684019]
  3. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  4. d'Aloisio E, et al.
    The Protein Disulfide Isomerase gene family in bread wheat (T. aestivum L.).
    BMC Plant Biol., 2010. 10: p. 101
    [PMID:20525253]